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View Structure Prediction Details

Protein: NUA_ARATH
Organism: Arabidopsis thaliana
Length: 2093 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for NUA_ARATH.

Predicted Domain #1
Region A:
Residues: [1-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFMPDEEL ARLSSDAASV VAERADEYIR KIYAELDSVR AKADAASITA EQTCSLLEQK  60
   61 YLSLSQDFSS LESQNAKLQS DFDDRLAELA QSQAQKHQLH LQSIEKDGEV ERMSTEMSEL 120
  121 HKSKRQLMEL LEQKDAEISE KNSTIKSYLD KIVKLTDTSS EKEARLAEAT AELARSQAMC 180
  181 SRLSQEKELT ERHAKWLDEE LTAKVDSYAE LRRRHSDLES EMSAKLVDVE KNYIECSSSL 240
  241 NWHKERLREL ETKIGSLQED LSSCKDAATT TEEQYTAELF TANKLVDLYK ESSEEWSRKA 300
  301 GELEGVIKAL EARLSQVESS YKERLDKEVS TKQLLEKENG DLKQKLEKCE AEIEKTRKTD 360
  361 ELNLIPFSNF T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [372-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRVDNSGTSN MIEESQAVIS KVPAGVSGTA LAASLLRDGW SLAKIYEKYQ EAVDAMRHEQ  60
   61 LGRKEAEMIL QRVLSELEEK AGFIQEERGE YERVVEAYCL VNQKLQDSVS EQSNMEKFIM 120
  121 ELKADLRRRE RENTLLQKDI SDLQKQVTIL LKECRDVQLR CGAARDDDED DYPLLSDVEM 180
  181 EMESEADKII SEHLLKFKDI NGLVEQNVKL RNLVRSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [589-780]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEQIESRETE LKETFEVDLK NKTDEASAKV ATVLKRAEEQ GQMIESLHTS VAMYKRLYEE  60
   61 EQKLHSSDSR SSDLSPAVVP GRKNFLHLLE DSEEATKRAQ EKAFERIRIL EEDFAKARSE 120
  121 VIAIRSERDK LAMEANFARE KLEGIMKESE RKREEMNSVL ARNIEFSQLI IDHQRKLRES 180
  181 SESLHAAEEI SR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [781-1031]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLSMEVSVLK QEKELLSNAE KRASDEVSAL SQRVYRLQAT LDTVQSTEEV REETRAAERR  60
   61 KQEEHIKQLQ REWAEAKKEL QEERSNARDF TSDRNQTLNN AVMQVEEMGK ELANALKAVS 120
  121 VAESRASVAE ARLSDLEKKI RSSDPKTLDM DSGGIVSLSD KEMSIELRTA KEEIEKLRGE 180
  181 VESSKSHMLQ YKSIAQVNET ALKQMESAHE NFRLEAEKRQ RSLEAELVSL RERVSELEND 240
  241 CIQKSEQLAT A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [1032-1139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAGKEDALLS ASAEIASLRE ENLVKKSQIE AMNIQMSTLK NDLETEHEKW RVAQRNYERQ  60
   61 VILLSETIQE LTKTSQALAA LQEEASELRK LADARGIENS ELNAKWSE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1140-1333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKLMLEQQKN LAEKKYHELN EQNKLLHSRL EAKHLNSAEK NSRSGTISSG STDSDHLEDS  60
   61 GLQRVVHYLR RTKEIAETEI SLMRQEKLRL QSQLESALKM AESARGSLTA ERASTRASLL 120
  121 TDDGIKSLQL QVSEMNLLRE SNMQLREENK HNFEKCQEMR EVAQKARMES ENFENLLKTK 180
  181 QTELDLCMKE MEKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1334-1461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMETDLHKKR VDELRETYRN IDIADYNRLK DEVRQLEEKL KAKDAHAEDC KKVLLEKQNK  60
   61 ISLLEKELTN CKKDLSEREK RLDDAQQAQA TMQSEFNKQK QELEKNKKIH YTLNMTKRKY 120
  121 EKEKDELS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1462-1568]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQNQSLAKQL EEAKEEAGKR TTTDAVVEQS VKEREEKEKR IQILDKYVHQ LKDEVRKKTE  60
   61 DLKKKDEELT KERSERKSVE KEVGDSLTKI KKEKTKVDEE LAKLERY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1569-1767]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTALTHLSEE LEKLKHADGN LPEGTSAVQV LSGSILNDQA AAYVSAVEYF ERVARSIASN  60
   61 SQVSTKPTDM VTEPSSGIPA AEPSTMTRVP SSTPLIKSPV ATTQQLPKVA SDNKEKRLIS 120
  121 QKPSTEFRRP SGRRIVRPQL VKPEESPKVD VDMPEAEGTG DEGKQPAAHE PESQVTTSVR 180
  181 PVQTLVRKRQ ADSLVSEPQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1768-2093]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDSLTQGETS SEIAPPASKK AKGSESHPDT SEGENLAKEP AIDELMDATT TTDGDNEETE  60
   61 AENAEEKTEE YVEAQQDNEA DEPVEESPTE TETIPTEEES RDQTEEENQE PLTDMESDKE 120
  121 EGELDLDTLE DLEEGTDVAS MMRSPEKEEV QPETLATPTQ SPSRMETAME EAETTIETPV 180
  181 EDDKTDEGGD AAEEAADIPN NANDQQEAPE TDIKPETSAA TTSPVSTAPT TSSTLASAIT 240
  241 SSGAPETEDP KRAPSPGGGS STIVTLADRA QMKRRERIAN IVVSRAPNPA TRGARGRTVN 300
  301 LRGGGRLLPR GGRAPRGGRG QSPSPP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
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