YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SRK2B_ARATH
Organism: Arabidopsis thaliana
Length: 361 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRK2B_ARATH.

Description E-value Query
Range
Subject
Range
gi|125533559 - gi|125533559|gb|EAY80107.1| hypothetical protein OsI_35279 [Oryza sativa Indica Group]
gi|115484405, gi... - gi|77548838|gb|ABA91635.1| Calcium-dependent protein kinase, isoform AK1, putative, expressed [Oryza...
312.0 [0..2] [360..45]

Back

Predicted Domain #1
Region A:
Residues: [1-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKYELVKDI GAGNFGVARL MRVKNSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI  60
   61 IRFKEVVLTP THIAIAMEYA AGGELFERIC SAGRFSEDEA RYFFQQLISG VSYCHAMQIC 120
  121 HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSMPKSTV GTPAYIAPEV LSRGEYDGKM 180
  181 ADVWSCGVTL YVMLVGAYPF EDQEDPKNFK KTIQRIMAVK YKIPDYVHIS QDCKHLLSRI 240
  241 FVTNSNKRIT IGDIKKHPWF LKNLPRELTE IAQAAYFRKE NPTFSLQSVE EIMKIVEEAK 300
  301 TPARVSRSIG AFGWGGGEDA EGKEEDAEEE VEEVEEEEDE EDEYDKTVKQ VHASMGEVRV 360
  361 S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.69897
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle