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View Structure Prediction Details

Protein: MTEF8_ARATH
Organism: Arabidopsis thaliana
Length: 500 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTEF8_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593780 - gi|21593780|gb|AAM65747.1| unknown [Arabidopsis thaliana]
438.0 [0..1] [500..1]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVILSLVSCS FSVFSPPISL RLHLPPVTSL CSHGTFPASS TFRSQLQPLL ISCLNHREPA  60
   61 LTFRCSCLSS PIESGSQIES LFSLFRDIGF IEEETEMILA KNPDIKSTSL DKIGARVASL 120
  121 QSLKINGFPL QGLIAKCPNL LTSEEFDLVI SFLVDELEGR LDPELVERLL SVVDTSILLS 180
  181 FNQKVRLLLL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [191-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGIPKEKISH VLNKVYLNKL LYQKSVEDIE RLISFLEPFG GIGIIARRPV ILNSDLDSQL  60
   61 IPRVDFIRNL SGEDDFATGT VLRRLPAILS YSVEHMNGQV EFLKSFAGLT SEQVFKIVHV 120
  121 FPNVI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [316-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSKERKLRP RIEFLKECGF DSPGMFKFLS KAPLILALSE NNLSHKLGFL VKIGYKHRTK  60
   61 ELAFAMGAVT RTSSDNMQRV IGLYLSYGLS FEDILAMSTK HPQVLQYNYT SLEEKLEYLI 120
  121 EYMGREVEEL LAFPAFLGYK LDSRIKHRYE EKLKSRGENM SLNKLLTVSA ERFSKAADNI 180
  181 EMICL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle