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View Structure Prediction Details

Protein: gi|22022566, gi|...
Organism: Arabidopsis thaliana
Length: 402 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22022566, gi|....

Description E-value Query
Range
Subject
Range
gi|45190603, gi|... - gi|45190603|ref|NP_984857.1| AEL004Wp [Ashbya gossypii ATCC 10895], gi|44983582|gb|AAS52681.1| AEL00...
gi|44983582 - gi|44983582|gb|AAS52681.1| AEL004Wp [Ashbya gossypii ATCC 10895]
364.0 [0..29] [400..95]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRSVDVYVK TLGPPVRSIL YSIFTSQQKP SSLPSLPFHF SLRSSSNIPT RCFSNVVAKS  60
   61 NSPIYDFQGF RNLFTERAIS SSTTTPVASA QPQQLQNQNQ HPAEVDEEIS MGLEDEAKLS 120
  121 IPVRAYFFST SVDLRSLIEQ NKQNFIPPTS RMTNYVVLKF GNHSDPTDTT RGRISGSESI 180
  181 YMVVFHYGSI VLFNVREHEV DEYLKVVERH ASGLLP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [217-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMRKDEYEVR ENPNLDTWME VGRDFIRLQF LNTDGIRTIG CVLGQSIALD YYGRQVDGMV  60
   61 AEFTEINRQL EITGTFTMKR KKLFQLVGKA NVILADVILK LGLFERSDIA WKDAKYGQIW 120
  121 EFLRDEFELT QSFANLDYKL KFVEHNVRFL QEILQNRKSA TLEWLIIILI SMEIAISFYN 180
  181 MSRASL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle