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View Structure Prediction Details

Protein: NIR_ARATH
Organism: Arabidopsis thaliana
Length: 586 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIR_ARATH.

Description E-value Query
Range
Subject
Range
gi|23397091 - gi|23397091|gb|AAN31830.1| putative ferredoxin--nitrite reductase [Arabidopsis thaliana]
574.0 [0..1] [586..1]

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Predicted Domain #1
Region A:
Residues: [1-586]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK  60
   61 EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD SEKSSKDDID VRLKWLGLFH 120
  121 RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP 180
  181 EILKGLASVG LTSLQSGMDN VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD 240
  241 FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD 300
  301 AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER 360
  361 GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ ADDMDELARL ADTYGSGELR 420
  421 LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR 480
  481 ALKVTEEVER LVSVPRPIRM HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG 540
  541 GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 149.0
Match: 2akjA
Description: Structure of spinach nitrite reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
sulfite reductase (NADPH) activity 10.5477019483845 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 6.9484358652029 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 6.71341182064697 bayes_pls_golite062009
catalytic activity 1.39967796334655 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 0.747822858523869 bayes_pls_golite062009
oxidoreductase activity 0.272934629796331 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle