YRC Public Data Repository - Protein Structure Prediction

Protein:	MED7A_ARATH
Organism:	Arabidopsis thaliana
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED7A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|55730559 - gi\|55730559\|emb\|CAH92001.1\| hypothetical protein [Pongo abelii] gi\|55730559\|emb\|... - hypothetical protein [Pongo pygmaeus]	243.0	[0..3]	[165..8]
gi\|109487990, gi... - gi\|109490586\|ref\|XP_001069084.1\| PREDICTED: similar to Cofactor required for Sp1 transcriptional act...	239.0	[0..3]	[165..8]
gi\|15242771 - gi\|15242771\|ref\|NP_195970.1\| unknown protein [Arabidopsis thaliana]	238.0	[0..1]	[166..1]
gi\|73954132 - gi\|73954132\|ref\|XP_536456.2\| PREDICTED: similar to Cofactor required for Sp1 transcriptional activat...	237.0	[0..3]	[165..8]
MED7_DANRE - Mediator of RNA polymerase II transcription subunit 7 OS=Danio rerio GN=med7 PE=2 SV=1	224.0	[0..3]	[165..8]
gi\|50754981 - gi\|50754981\|ref\|XP_414569.1\| PREDICTED: similar to Cofactor required for Sp1 transcriptional activat...	221.0	[0..3]	[165..8]
MED7_ANOGA - Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=MED7 PE=3 SV=2 gi\|55241950, gi\|... - gi\|58382667\|ref\|XP_312090.2\| AGAP002823-PA [Anopheles gambiae str. PEST], gi\|55241950\|gb\|EAA07749.3\|...	218.0	[0..3]	[165..10]
gi\|113205910, gi... - gi\|77745597\|gb\|ABB02676.1\| cofactor required for Sp1 transcriptional activation subunit 9 [Sus scrof...	214.0	[0..3]	[165..8]
MED7_AEDAE - Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1	214.0	[0..3]	[165..10]

Back

Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATYPPPP PYYRLYKDYS ENPNSAPEPP PPIEGTYVCF GGNYTTEDVL PSLEEQGVPQ  60
   61 LYPK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.337242
Match:	PF05983.2
Description:	No description for PF05983.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.561	N/A	N/A	a.189.1	Description not found.
View	Download	0.307	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.307	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.234	N/A	N/A	a.64.2	Bacteriocin AS-48
View	Download	0.222	N/A	N/A	b.34.5	Translation proteins SH3-like domain
View	Download	0.220	N/A	N/A	g.41.7	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain

Predicted Domain #2

Region A:
Residues: [65-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSNLDYKNEL RSLNRELQLH ILELADVLVD RPSQYAKRIG EISSIFKNLH HLLNSLRPHQ  60
   61 ARATLIHIME LQIQQRKQAV EDIKRRREEA QRLLKDAYLT LDGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1ykeA
Description:	Structure of the mediator MED7/MED21 subcomplex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits