YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|20466726, gi|...
Organism: Arabidopsis thaliana
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20466726, gi|....

Description E-value Query
Range
Subject
Range
gi|4850383, gi|2... - gi|4850383|gb|AAD31053.1|AC007357_2 Contains similarity to gi|4417304 F15O11.7 putative beta-1,4-man...
614.0 [0..4] [386..6]
gi|45433905 - gi|45433905|emb|CAF33485.2| putative N-acetylglucosaminyltransferase III [Cucumis sativus]
595.0 [0..4] [385..10]
gi|61845111 - gi|61845111|emb|CAI70376.1| beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula...
591.0 [0..4] [385..6]
gi|215695200, gi... - gi|50925145|ref|XP_472878.1| OSJNBa0044K18.7 [Oryza sativa (japonica cultivar-group)], gi|38605764|e...
gi|116309905, gi... - gi|125548719|gb|EAY94541.1| hypothetical protein OsI_16317 [Oryza sativa Indica Group], gi|116309905...
590.0 [0..4] [385..5]

Back

Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGYINSKK TDDICEDVCG QGSKAAKTIS RLKCVLKGFD LRTYLFLFVL MPFGILAIYL  60
   61 HGQKFTYFFR PLWESPPKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQTIPHYYNE NVTMESLCSL HGWGIRDSPR RVFDAVLFSN EKDLLTVRWN ELYPYVTQFV  60
   61 ILESNSTFTG LPKPLVFKSN KDQFKFVEPR LTYGTIGGRF RKGENPFVEE AYQRVALDQL 120
  121 LRIAGIQEDD LLIMSDVDEI PSAHTINLLR WCDDIPPVLH LQLKNY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYSFEYYVDS KSWRASIHRY SPGKTRYAHF RQSNVMLADS GWHCSFCFRY ISEFIFKMKA  60
   61 YSHSDRVRFS HYLNPRRIQD VICKGTDLFD MLPEEYTFKE IIGKMGPVPR SYSAVHLPSY 120
  121 LLYNAEQYKY LLPGNCIREK QTGFI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle