| Protein: | gi|25386549, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 308 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25386549, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
256.0 | [0..6] | [308..13] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MAVLEASLSI FSFSSSSSSS KPYLFSKRSS SLKLTALSLR IPSNLSPVFS LRSGSDNSRR 60
61 LVSVLCSVAE KETSADEETS QEEKTEETQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.613 | a.112.1 | Description not found. |
| View | Download | 0.574 | a.64.1 | Saposin |
| View | Download | 0.483 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.427 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.387 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [90-308] |
1 11 21 31 41 51
| | | | | |
1 NSNLKRKLFV FNLPWSMSVN DISELFGQCG TVNNVEIIRQ KDGKNRGFAF VTMASGEEAQ 60
61 AAIDKFDTFQ VSGRIISVSF ARRFKKPTPK SPNDLPSPAP GDTRHKLYVS NLAWKARSTH 120
121 LRELFTAADF NPVSARVVFA DPEGRSSGYG FVSFATREEA ENAITKLNGK EIMGRPITLK 180
181 FSLRSASESE DGDSVEANNA SEDGDTVEDK NTSEENIVE
|
| Detection Method: | |
| Confidence: | 35.69897 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.925882442647253 | bayes_pls_golite062009 |
| nucleic acid binding | 0.412705465356557 | bayes_pls_golite062009 |
| RNA binding | 0.0622892880461364 | bayes_pls_golite062009 |
