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View Structure Prediction Details

Protein: gi|25345297, gi|...
Organism: Arabidopsis thaliana
Length: 591 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25345297, gi|....

Description E-value Query
Range
Subject
Range
gi|4468805, gi|1... - pir||T04733 auxin-regulated protein GH3 homolog F6G17.40 - Arabidopsis thaliana, gi|7270721|emb|CAB...
895.0 [0..2] [589..14]

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Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METVEAGHDD VIGWFEHVSE NACKVQSETL RRILELNSGV EYLRKWLGTV DVEKMDDYTL  60
   61 ETLFTSLVPI VSHADLDPYI QRIADGETSP LLTQEPITVL SLSSGTTEGR QKYVPFTRHS 120
  121 AQTTLQIFRL SAAYRSRFYP IREGGRILEF IYAGKEFKTL GGLTVGTATT HYYASEEFKT 180
  181 KQETTKSFTC SPQEVISGGD FGQCTY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [207-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CHLLLGLHYS SQVEFVASAF SYTIVQAFSF FEEIWREICA DIKEGNLSSR ITLPKMRKAV  60
   61 LALIRPNPSL ASHIEEICLE L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [288-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETNLGWFGLI SKLWPNAKFI SSIMTGSMLP YLNKLRHYAG GLPLVSADYG STESWIGVNV  60
   61 DPHLPPEDVS FAVIPTFSYF EFIPLYRRQN QSDICIDGDF VEDKPVPLSQ VKLGQEYELV 120
  121 LTTFTGLYRY RLGDVVEVTS FHKGTPKLSF IYRRKLILTI NIDKNTEKDL QRVVDKASQL 180
  181 LSRSTRAEVV DFTSH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [483-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADVIARPGHY VIYWEIRGEA DDKALEECCR EMDTAFVDYG YVVSRRMNSI GPLELRVVER  60
   61 GTFGKVAERC VGKCGGLNQF KTPRCTTNSV MLDILNDSTI KRFRSSAYD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle