YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HSOP1_ARATH
Organism: Arabidopsis thaliana
Length: 572 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSOP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|113475191, gi... - gi|113475191|ref|YP_721252.1| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...
386.0 [0..5] [565..15]

Back

Predicted Domain #1
Region A:
Residues: [1-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEAKAKGN AAFSSGDFTT AINHFTEAIA LAPTNHVLFS NRSAAHASLH QYAEALSDAK  60
   61 ETIKLKPYWP KGYSRLGAAH LGLNQFELAV TAYKKGLDVD PTNEALKSGL ADAEASVARS 120
  121 RAAPNPFGDA FQGPEMWTKL TSDPSTRGFL QQPDFVNMMQ EIQKNPSSLN LYLKDQRVMQ 180
  181 SLGVLLNVKF RPPPPQGDEA EVPESDMGQS SSNEPEVEKK REPEPEPEPE VTEEKEKKER 240
  241 KEKAKKEKEL GNAAYKKKDF ETAIQHYSTA IEIDDEDISY LTNRAAVYLE MGKYNECIED 300
  301 CNKAVERGRE LRSDYKMVAR ALTRKGTALT KMAKCSKDYE PAIEAFQKAL TEHRNPDTLK 360
  361 RLNDAERAKK EWEQKQYFDP KLGDEEREKG NDFFKEQKYP EAIKHYTEAI KRNPNDHKAY 420
  421 SNRAASYTKL GAMPEGLKDA EKCIELDPTF SKGYSRKAAV QFFLKEYDNA METYQAGLEH 480
  481 DPSNQELLDG VKRCVQQINK ANRGDLTPEE LKERQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.0
Match: 2gw1A
Description: No description for 2gw1A was found.

Predicted Domain #2
Region A:
Residues: [516-572]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKGMQDPEIQ NILTDPVMRQ VLSDLQENPS AAQKHMQNPM VMNKIQKLIS AGIVQMK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.968
Match: 1ulyA
Description: Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle