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View Structure Prediction Details

Protein: SD129_ARATH
Organism: Arabidopsis thaliana
Length: 805 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SD129_ARATH.

Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMVLFACLL LLIIFPTCGY AAINTSSPLS IRQTLSSPGG FYELGFFSPN NTQNQYVGIW  60
   61 FKKIVPRVVV WVANRDTPVT SSAANLTISS NGSLILLDGK QDVIWSTGKA FTSNKCHAEL 120
  121 LDTGNFVVID DVSGNKLWQS FEHLGNTMLP QSSLMYDTSN GKKRVLTTWK SNSDPSPGEF 180
  181 SLEITPQIPT QGLIRRGSVP YWR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.39794
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [204-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CGPWAKTRFS GISGIDASYV SPFSVVQDTA AGTGSFSYST LRNYNLSYVT LTPEGKMKIL  60
   61 WDDGNNWKLH LSLPENPCDL YGRCGPYGLC VRSDPPKCEC LKGFVPKSDE EWGKGNWTSG 120
  121 CVRRTKLSCQ AKSSMKTQGK DTDIFYRMTD VKTPDLHQFA SFLNAEQCYQ GCLGNCSCTA 180
  181 FAYISGIGCL VWNGELADTV QFLSSGEFLF IRLASSELAG SSRRKIIVGT TVSLSIFLIL 240
  241 VFAAIMLWRY RAKQNDAWKN GFERQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1m6bA
Description: Receptor protein-tyrosine kinase Erbb-3 extracellular domain; Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [469-805]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVSGVNFFEM HTIRTATNNF SPSNKLGQGG FGPVYKGKLV DGKEIGVKRL ASSSGQGTEE  60
   61 FMNEITLISK LQHRNLVRLL GYCIDGEEKL LIYEFMVNKS LDIFIFDPCL KFELDWPKRF 120
  121 NIIQGIARGL LYLHRDSRLR VIHRDLKVSN ILLDDRMNPK ISDFGLARMF QGTQYQDNTR 180
  181 RVVGTLGYMS PEYAWAGLFS EKSDIYSFGV LMLEIISGKR ISRFIYGDES KGLLAYTWDS 240
  241 WCETGGSNLL DRDLTDTCQA FEVARCVQIG LLCVQHEAVD RPNTLQVLSM LTSATDLPVP 300
  301 KQPIFAVHTL NDMPMLQANS QDFLSVNEMT ESMIQGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.522879
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle