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View Structure Prediction Details

Protein: SMT1_ARATH
Organism: Arabidopsis thaliana
Length: 336 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21434843 - gi|21434843|gb|AAM53553.1|AF494289_1 cephalopod [Arabidopsis thaliana]
287.0 [0..1] [336..1]

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Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW  60
   61 GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD VGCGIGGPLR EIARFSNSVV 120
  121 TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG 180
  181 CYKEIYRVLK PGQCFAAYEW CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK 240
  241 QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG 300
  301 SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 1kp9A
Description: CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.25333584501255 bayes_pls_golite062009
transferase activity 1.07321114919891 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.644010137949015 bayes_pls_golite062009
methyltransferase activity 0.635463629299812 bayes_pls_golite062009
binding 0.422181371325275 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.181420092548185 bayes_pls_golite062009
DNA binding 0.00720144044916005 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle