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View Structure Prediction Details

Protein: CESA3_ARATH
Organism: Arabidopsis thaliana
Length: 1065 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CESA3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEGETAGK PMKNIVPQTC QICSDNVGKT VDGDRFVACD ICSFPVCRPC YEYERKDGNQ  60
   61 SCPQCKTRYK RLKG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.39794
Match: 1weoA
Description: Solution structure of RING-finger in the catalytic subunit (IRX3) of cellulose synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [75-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPAIPGDKDE DGLADEGTVE FNYPQKEKIS ERMLGWHLTR GKGEEMGEPQ YDKEVSHNHL  60
   61 PRLTSRQDTS GEFSAASPER LSVSSTIAGG KRLPYSSDVN QSPNRRIVDP VGLGNVAWKE 120
  121 RVDGWKMKQE KNTGPVSTQA ASERGGVDID ASTDILADEA LLND

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EARQPLSRKV SIPSSRINPY RMVIMLRLVI LCLFLHYRIT NPVPNAFALW LVSVICEIWF  60
   61 ALSWILDQFP KWFPVNRETY LDRLALRYDR EGEPSQLAAV DIFVSTVDPL KEPPLVTANT 120
  121 VLSILAVDYP VDKVSCYVSD DGAAMLSFES LAETSEFARK WVPFCKKYSI EPRAPEWYFA 180
  181 AKIDYLKDKV QTSFVKDRRA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [439-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKREYEEFKI RINALVSKAL KCPEEGWVMQ DGTPWPGNNT RDHPGMIQVF LGQNGGLDAE  60
   61 GNELPRLVYV SREKRPGFQH HKKAGAMNAL VRVSAVLTNG PFILNLDCDH YINNSK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [555-809]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALREAMCFLM DPNLGKQVCY VQFPQRFDGI DKNDRYANRN TVFFDINLRG LDGIQGPVYV  60
   61 GTGCVFNRTA LYGYEPPIKV KHKKPSLLSK LCGGSRKKNS KAKKESDKKK SGRHTDSTVP 120
  121 VFNLDDIEEG VEGAGFDDEK ALLMSQMSLE KRFGQSAVFV ASTLMENGGV PPSATPENLL 180
  181 KEAIHVISCG YEDKSDWGME IGWIYGSVTE DILTGFKMHA RGWRSIYCMP KLPAFKGSAP 240
  241 INLSDRLNQV LRWAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2z87A
Description: No description for 2z87A was found.

Predicted Domain #6
Region A:
Residues: [810-1065]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVEILFSRH CPIWYGYNGR LKFLERFAYV NTTIYPITSI PLLMYCTLPA VCLFTNQFII  60
   61 PQISNIASIW FLSLFLSIFA TGILEMRWSG VGIDEWWRNE QFWVIGGVSA HLFAVFQGIL 120
  121 KVLAGIDTNF TVTSKASDED GDFAELYLFK WTTLLIPPTT LLIVNLVGVV AGVSYAINSG 180
  181 YQSWGPLFGK LFFAFWVIVH LYPFLKGLMG RQNRTPTIVV VWSVLLASIF SLLWVRIDPF 240
  241 TSRVTGPDIL ECGINC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle