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View Structure Prediction Details

Protein: LEU12_ARATH
Organism: Arabidopsis thaliana
Length: 631 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEU12_ARATH.

Description E-value Query
Range
Subject
Range
gi|75707983 - gi|75707983|gb|ABA26446.1| 2-isopropylmalate synthase 1 [Brassica insularis]
655.0 [0..1] [631..1]

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Predicted Domain #1
Region A:
Residues: [1-631]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSILKSPN LSSPSFGVPS IPALSSSSTS PFSSLHLRSQ NHRTISLTTA GKFRVSYSLS  60
   61 ASSPLPPHAP RRRPNYIPNR ISDPNYVRIF DTTLRDGEQS PGATLTSKEK LDIARQLAKL 120
  121 GVDIIEAGFP AASKDDFEAV KTIAETVGNT VDENGYVPVI CGLSRCNKKD IETAWEAVKY 180
  181 AKRPRIHTFI ATSDIHLKYK LKKSKEEVIE IARNMVRFAR SLGCEDVEFS PEDAGRSERE 240
  241 YLYEILGEVI KAGATTLNIP DTVGITLPSE FGQLIADIKA NTPGIQNVII STHCQNDLGL 300
  301 STANTLSGAH SGARQVEVTI NGIGERAGNA SLEEVVMAIK CRGDHVLGGL FTGIDTRHIV 360
  361 MTSKMVEEYT GMQTQPHKAI VGANAFAHES GIHQDGMLKH KGTYEIMSPE EIGLERSNDA 420
  421 GIVLGKLSGR HALKDRLNEL GYVLDDGQLS NLFWRFKAVA EQKKRVTDAD LIALVSDEVF 480
  481 QPEAVWKLLD MQITCGTLGL STSTVKLADS DGKEHVACSV GTGPVDAAYK AVDLIVKEPA 540
  541 TLLEYSMNAV TEGIDAIATT RVLIRGDNNY SSTNAVTGES VERTFSGTGA GMDIVVSSVK 600
  601 AYVGALNKML GFKEHTSTLS KTPLETNEVP A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 124.0
Match: 1sr9A
Description: Crystal Structure of LeuA from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
2-isopropylmalate synthase activity 3.07962096729216 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 2.96685031644778 bayes_pls_golite062009
catalytic activity 2.67031204377352 bayes_pls_golite062009
porphobilinogen synthase activity 1.24455949903754 bayes_pls_golite062009
binding 1.1388634428163 bayes_pls_golite062009
lyase activity 0.740424046054758 bayes_pls_golite062009
transferase activity 0.464721888799972 bayes_pls_golite062009
carbon-carbon lyase activity 0.36754360512349 bayes_pls_golite062009
transaldolase activity 0.184100272651834 bayes_pls_golite062009
fructose-bisphosphate aldolase activity 0.0818126250353252 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle