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View Structure Prediction Details

Protein: NPC3_ARATH
Organism: Arabidopsis thaliana
Length: 523 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPC3_ARATH.

Description E-value Query
Range
Subject
Range
gi|17529016 - gi|17529016|gb|AAL38718.1| unknown protein [Arabidopsis thaliana]
578.0 [0..1] [523..1]

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Predicted Domain #1
Region A:
Residues: [1-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEETSSGGG SSASPIKTIV VLVQENRSFD HMLGWFKELN PEIDGVSESE PRSNPLSTSD  60
   61 PNSAQIFFGK ESQNIDPDPG HSFQAIYEQV FGKPFSDESP YPDPKMNGFV QNAEAITKGM 120
  121 SEKVVMQGFP PEKLPVFKEL VQEFAVCDRW FSSLPSSTQP NRLYVHAATS NGAFSNDTNT 180
  181 LVRGFPQRTV FESLEESGFT FGIYYQSFPN CLFYRNMRKL KYVDNFHQYH LSFKRHCKEG 240
  241 KLPNYVVIEP RYFKILSAPA NDDHPKNDVV EGQNLVKEIY EALRASPQWN EILFVVVYDE 300
  301 HGGYYDHVPT PVIGVPNPDG LVGPEPYNFK FDRLGVRVPA LLISPWIEPG TVLHEPNGPE 360
  361 PTSQFEHSSI PATLKKIFNL KSFLTKRDEW AGTLDAVINR TSPRTDCPVT LP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.39794
Match: 2d1gA
Description: No description for 2d1gA was found.

Predicted Domain #2
Region A:
Residues: [413-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELPRARDIDI GTQEEDEDLT DFQIELIQAA AVLKGDHIKD IYPFKLADKM KVLDAARYVE  60
   61 EAFTRFHGES KKAKEEGRDE HEIVDLSKGS TRHSTPKSFV QKLFSCLICD N

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle