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View Structure Prediction Details

Protein: KTNA1_ARATH
Organism: Arabidopsis thaliana
Length: 523 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KTNA1_ARATH.

Description E-value Query
Range
Subject
Range
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ...
Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...
430.0 [0..1] [520..184]

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Predicted Domain #1
Region A:
Residues: [1-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV  60
   61 KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS FVFQPLDEYP TSSGGGPMDD 120
  121 PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA 180
  181 RSSTAGKKGA ASKSNKAESM NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD 240
  241 VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF 300
  301 FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK 360
  361 SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL RRRLEKRIYI PLPDFESRKA 420
  421 LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS 480
  481 KDDISNDPVA MCDFEEAIRK VQPSVSSSDI EKHEKWLSEF GSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 111.0
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle