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View Structure Prediction Details

Protein: CDPK3_ARATH
Organism: Arabidopsis thaliana
Length: 529 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDPK3_ARATH.

Description E-value Query
Range
Subject
Range
CDPKH_ARATH - Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1
441.0 [0..1] [528..1]

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Predicted Domain #1
Region A:
Residues: [1-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHRHSKSKS SDPPPSSSSS SSGNVVHHVK PAGERRGSSG SGTVGSSGSG TGGSRSTTST  60
   61 QQNGRILGRP MEEVRRTYEF GRELGRGQFG VTYLVTHKET KQQVACKSIP TRRLVHKDDI 120
  121 EDVRREVQIM HHLSGHRNIV DLKGAYEDRH SVNLIMELCE GGELFDRIIS KGLYSERAAA 180
  181 DLCRQMVMVV HSCHSMGVMH RDLKPENFLF LSKDENSPLK ATDFGLSVFF KPGDKFKDLV 240
  241 GSAYYVAPEV LKRNYGPEAD IWSAGVILYI LLSGVPPFWG ENETGIFDAI LQGQLDFSAD 300
  301 PWPALSDGAK DLVRKMLKYD PKDRLTAAEV LNHPWIREDG EASDKPLDNA VLSRMKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.0
Match: 2bdwA
Description: Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [358-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRAMNKLKKM ALKVIAENLS EEEIIGLKEM FKSLDTDNNG IVTLEELRTG LPKLGSKISE  60
   61 AEIRQLMEAA DMDGDGSIDY LEFISATMHM NRIEREDHLY TAFQFFDNDN SGYITMEELE 120
  121 LAMKKYNMGD DKSIKEIIAE VDTDRDGKIN YEEFVAMMKK GNPELVPNRR RM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.0
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle