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View Structure Prediction Details

Protein: PKP1_ARATH
Organism: Arabidopsis thaliana
Length: 596 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PKP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|114657942 - gi|114657942|ref|XP_001175098.1| PREDICTED: hypothetical protein isoform 12 [Pan troglodytes]
629.0 [0..41] [594..1]

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Predicted Domain #1
Region A:
Residues: [1-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSIQFSTP SHTPHLLHLP HSQFNRPLSS ISFRRFPLTT IKYTSIRASS SSSPSPDLDS  60
   61 SSSSSSSQVL LSPNGTGAVK SDERSVVATA VTTDTSGIEV DTVTEAELKE NGFRSTRRTK 120
  121 LICTIGPATC GFEQLEALAV GGMNVARLNM CHGTRDWHRG VIRSVRRLNE EKGFAVAIMM 180
  181 DTEGSEIHMG DLGGEASAKA EDGEVWTFTV RAFDSSRPER TISVSYDGFA EDVRVGDELL 240
  241 VDGGMVRFEV IEKIGPDVKC LCTDPGLLLP RANLTFWRDG SLVRERNAML PTISSKDWLD 300
  301 IDFGIAEGVD FIAVSFVKSA EVINHLKSYL AARSRGGEIG VIAKIESIDS LTNLEEIILA 360
  361 SDGAMVARGD LGAQIPLEQV PAAQQRIVQV CRALNKPVIV ASQLLESMIE YPTPTRAEVA 420
  421 DVSEAVRQRS DALMLSGESA MGQFPDKALT VLRTVSLRIE RWWREEKRHE SVPLQAIGSS 480
  481 FSDKISEEIC NSAAKMANNL GVDAVFVYTT SGHMASLVSR CRPDCPIFAF TTTTSVRRRL 540
  541 NLQWGLIPFR LSFSDDMESN LNKTFSLLKS RGMIKSGDLV IAVSDMLQSI QVMNVP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 175.0
Match: 1t5aA
Description: Human Pyruvate Kinase M2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle