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View Structure Prediction Details

Protein: gi|7321070, gi|2...
Organism: Arabidopsis thaliana
Length: 552 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7321070, gi|2....

Description E-value Query
Range
Subject
Range
gi|7267971, gi|7... - pir||T06628 hypothetical protein T20K18.50 - Arabidopsis thaliana, gi|7267971|emb|CAB78312.1| putat...
905.0 [0..9] [552..16]
gi|92869815 - gi|92869815|gb|ABE79305.1| Proteinase inhibitor I4, serpin [Medicago truncatula]
897.0 [0..8] [552..17]
gi|125601205, gi... - gi|34913308|ref|NP_918001.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|22296387|d...
809.0 [0..2] [552..32]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE  60
   61 TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI EKSEAKIGNM TVKNSIDCDE 120
  121 DLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [124-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVNCSDPRVL VAVERFNLKV FKSIVFLEYE TPVNGSKLDE CDVSWRFRNK KEKSWRRYRD  60
   61 FRRFRFGFGE NCTYKVFHTS GWHSGVNARR PRISRPSSSR GARGGDSEIN DTIPTLGSQT 120
  121 SFRRGKYLYY SRGGDYCKGM NQYMWSFLCG LGEAMYL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [281-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRTFVMDLSL CLSSSYSSKG KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH  60
   61 KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW 120
  121 KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DAD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [444-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TWPDAILTKL KGLVQVWRNL YVATNEPFYN YFDKLRSQYK VHLLDDYSYL WGNKSEWYNE  60
   61 TSLLNNGKPV EFDGYMRVAV DTEVFYRGKT RVETFYNLTT DCKDGINTC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle