YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15233517, gi\|...
Organism:	Arabidopsis thaliana
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15233517, gi|....

Description	E-value	Query Range	Subject Range
G10B_ORYSA, BD31... - (Q65WT0) Protein G10 homolog 2, Protein BUD31 homolog 2 (Protein G10 homolog 2) - Oryza sativa (Rice... gi\|125552524 - gi\|125552524\|gb\|EAY98233.1\| hypothetical protein OsI_20144 [Oryza sativa Indica Group] BD31B_ORYSJ - Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica GN=Os05g0446300 PE=2 SV=1	260.0	[0..1]	[145..1]
BUD31_XENLA - Protein BUD31 homolog OS=Xenopus laevis GN=bud31 PE=2 SV=1	258.0	[0..1]	[142..1]
gi\|49618921, gi\|... - gi\|51467966\|ref\|NP_001003860.1\| maternal G10 transcript [Danio rerio], gi\|49618921\|gb\|AAT68045.1\| G1...	257.0	[0..1]	[142..1]
gi\|50755565, gi\|... - gi\|50755565\|ref\|XP_414798.1\| PREDICTED: similar to BUD31 homolog (yeast) isoform 4 [Gallus gallus], ... gi\|197127500, gi... - gi\|197127501\|gb\|ACH43999.1\| putative maternal G10 transcript variant 1 [Taeniopygia guttata], gi\|197...	257.0	[0..1]	[142..1]
gi\|60810095 - gi\|60810095\|gb\|AAX36103.1\| maternal G10 transcript [synthetic construct]	256.0	[0..1]	[142..1]
gi\|229292493, gi... - gi\|229292493\|gb\|EEN63157.1\| hypothetical protein BRAFLDRAFT_113775 [Branchiostoma floridae], gi\|2194... BUD31_BRABE - Protein BUD31 homolog OS=Branchiostoma belcheri PE=2 SV=1	256.0	[0..1]	[142..1]
ENSOCUP000000091... - pep:novel scaffold:oryCun2:GL018760:856252:861702:-1 gene:ENSOCUG00000010576 transcript:ENSOCUT00000... tr\|G3I387\|G3I387... - Protein BUD31-like OS=Cricetulus griseus GN=H671_4g11475 PE=4 SV=1 gi\|114614829, gi... - gi\|114614833\|ref\|XP_001138290.1\| PREDICTED: G10 protein isoform 5 [Pan troglodytes], gi\|114614831\|re... gi\|149755348 - gi\|149755348\|ref\|XP_001494800.1\| PREDICTED: similar to Protein BUD31 homolog (Protein G10 homolog) (... IPI:IPI00856171.... - Tax_Id=10090 17 kDa protein, Tax_Id=10090 Gene_Symbol=Bud31 17 kDa protein, Tax_Id=10090 Gene_Symbol... CCDS5663.1_1 - null BUD31_BOVIN - Protein BUD31 homolog OS=Bos taurus GN=BUD31 PE=2 SV=1 gi\|61364392, gi\|... - gi\|61364392\|gb\|AAX42535.1\| maternal G10 transcript [synthetic construct], gi\|208965904\|dbj\|BAG72966.... BUD31_GECJA, G10... - (Q66VE5) Protein G10 homolog, Protein BUD31 homolog OS=Gecko japonicus GN=BUD31 PE=2 SV=1 gi\|73957943, gi\|... - gi\|73957943\|ref\|XP_860855.1\| PREDICTED: similar to G10 protein homolog (EDG-2) isoform 2 [Canis fami... BUD31_RAT - Protein BUD31 homolog OS=Rattus norvegicus GN=Bud31 PE=2 SV=2 BUD31 - BUD31 homolog (S. cerevisiae) ENSCJAT00000030818 - null gi\|109066081 - gi\|109066081\|ref\|XP_001111727.1\| PREDICTED: similar to Protein G10 homolog (EDG-2) [Macaca mulatta] tr\|M3X8H2\|M3X8H2... - BUD31 homolog OS=Felis catus GN=BUD31 PE=4 SV=1	256.0	[0..1]	[142..1]
gi\|90399342 - gi\|90399342\|emb\|CAJ86113.1\| H0811D08.6 [Oryza sativa (indica cultivar-group)]	255.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKVKTNRVK YPEGWELIEP TLRELDAKMR EAETDSHDGK RKCETLWPIF KVSHQRSRYV  60
   61 YDLYYRREEI SKELYEFCLD QGYADRSLIA KWKKSGYERL CCLRCIQPRD HNYGTTCVCR 120
  121 VPKHLREEKV VECVHCGCQG CASGD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.30103
Match:	PF01125.8
Description:	No description for PF01125.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.363	N/A	N/A	a.216.1	Description not found.
View	Download	0.275	N/A	N/A	a.24.2	Aspartate receptor, ligand-binding domain
View	Download	0.275	N/A	N/A	a.24.2	Aspartate receptor, ligand-binding domain
View	Download	0.266	N/A	N/A	a.118.1	ARM repeat
View	Download	0.257	N/A	N/A	a.1.1	Globin-like
View	Download	0.257	N/A	N/A	a.1.1	Globin-like
View	Download	0.257	N/A	N/A	a.118.13	Arp2/3 complex 16 kDa subunit ARPC5
View	Download	0.257	N/A	N/A	a.118.13	Arp2/3 complex 16 kDa subunit ARPC5

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits