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View Structure Prediction Details

Protein: AP1M2_ARATH
Organism: Arabidopsis thaliana
Length: 428 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP1M2_ARATH.

Description E-value Query
Range
Subject
Range
gi|42554497, gi|... - gi|46130854|ref|XP_389158.1| hypothetical protein FG08982.1 [Gibberella zeae PH-1], gi|42554497|gb|E...
479.0 [0..4] [427..1]

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Predicted Domain #1
Region A:
Residues: [1-428]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY  60
   61 MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE LEEESLRDNF VVVYELLDEM 120
  121 MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN 180
  181 VNILVNSNGQ IVRSDVVGAL KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK 240
  241 FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA 300
  301 RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR 360
  361 AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL KIIEKSGYQA LPWVRYITMA 420
  421 GEYELRLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 130.0
Match: 1w63M
Description: AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle