YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PAO1_ARATH
Organism: Arabidopsis thaliana
Length: 472 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAO1_ARATH.

Description E-value Query
Range
Subject
Range
gi|60652879, gi|... - gi|60652881|gb|AAX29135.1| monoamine oxidase A [synthetic construct], gi|60652879|gb|AAX29134.1| mon...
264.0 [0..4] [470..14]

Back

Predicted Domain #1
Region A:
Residues: [1-472]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTASVIIIG AGISGISAAK VLVENGVEDV LILEATDRIG GRIHKQNFGD VPVELGAGWI  60
   61 AGVGGKESNP VWELASRFNL RTCFSDYTNA RFNIYDRSGK IFPTGIASDS YKKAVDSAIL 120
  121 KLKSLEAQCS GQVAEEAPSS PKTPIELAID FILHDFEMAE VEPISTYVDF GEREFLVADE 180
  181 RGYECLLYKM AEEFLVTSHG NILDYRLKLN QVVREVQQSR NGVVVKTEDG SVYEANYVIV 240
  241 SASIGVLQSD LLSFQPLLPR WKTEAIQKCD VMVYTKIFLK FPQCFWPCGP GQEFFIYAHE 300
  301 QRGYFTFWQH MENAYPGSNI LVVTLTNEQS KRVEAQSDQE TMKEAMSVLR DMFGATIPYA 360
  361 TDILVPRWWN NRFQRGSYSN YPMISDNQLL QNIKAPVGRI FFTGEHTSEK FSGYVHGGYL 420
  421 AGIDTSKSLL EEMKQSLLLQ PLLAFTESLT LTHQKPNNSQ IYTNVKFISG TS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.30103
Match: 1b37A
Description: Polyamine oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.56773888754354 bayes_pls_golite062009
oxidoreductase activity 0.979787001928241 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle