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View Structure Prediction Details

Protein: gi|27363256, gi|...
Organism: Arabidopsis thaliana
Length: 363 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27363256, gi|....

Description E-value Query
Range
Subject
Range
gi|145339748, gi... - gi|62320428|dbj|BAD94891.1| putative protein [Arabidopsis thaliana], gi|145339748|ref|NP_191729.2| u...
468.0 [0..1] [361..1]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE  60
   61 RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE FFRAYYIRLK LKKQIVVFNH 120
  121 LLEHQYHLT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.60206
Match: PF09713.1
Description: No description for PF09713.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.927 N/A N/A a.39.1 EF-hand

Predicted Domain #2
Region A:
Residues: [130-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYNVHSKVPL VPMQNGIHPM ASVNNMPMGY PVLQHPQMHA QGHPHLDPMS CGMSSCHVVN  60
   61 GVPAPANFQP MRINSGNDMV IDTTMAEPTP MIPPNSGMSD MPVSPASVAS SGHFPFAASD 120
  121 MSGMGMDTSA LDSAFTSDVG TSVGLQLGSD GGAGNSRDPL RPFDQIPWNF SLSDLTADLS 180
  181 NLGDLGALGN YPGSPFLPSD SEILLDSPEQ EDIDEFFVDS IPGPPCSQSE EDKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle