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View Structure Prediction Details

Protein: MYB3_ARATH
Organism: Arabidopsis thaliana
Length: 257 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYB3_ARATH.

Description E-value Query
Range
Subject
Range
gi|3941410, gi|6... - gi|6587826|gb|AAF18515.1|AC006551_1 Putative DNA binding protein [Arabidopsis thaliana], gi|41619116...
232.0 [0..12] [257..1]
gi|42541177 - gi|42541177|gb|AAS19480.1| MYB6 [Tradescantia fluminensis]
229.0 [0..1] [257..1]
gi|7438345, gi|2... - pir||T09879 myb-related protein A - upland cotton, gi|437327|gb|AAA33067.1| MYB1 [Gossypium hirsutum...
218.0 [0..1] [255..1]
gi|19055 - gi|19055|emb|CAA50221.1| MybHv5 [Hordeum vulgare subsp. vulgare]
gi|421983 - pir||S35729 myb-related protein 2 - barley
209.0 [0..1] [251..1]
gi|1167484, gi|2... - pir||S69189 myb-related protein TMH27 - tomato, gi|1167484|emb|CAA64614.1| transcription factor [Sol...
205.0 [0..1] [255..1]
gi|115480405, gi... - gi|50726662|dbj|BAD34380.1| putative Myb-related protein Zm38 [Oryza sativa Japonica Group], gi|2157...
gi|125564522 - gi|125564522|gb|EAZ09902.1| hypothetical protein OsI_32196 [Oryza sativa Indica Group]
205.0 [0..1] [256..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY  60
   61 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1a5jA
Description: CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [121-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD  60
   61 YGNEEDWVLN LELSVGPSYR YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL 120
  121 FRNESCRNCR VSDVRTH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle