YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MD36A_ARATH
Organism: Arabidopsis thaliana
Length: 320 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MD36A_ARATH.

Description E-value Query
Range
Subject
Range
gi|73954064 - gi|73954064|ref|XP_546252.2| PREDICTED: similar to fibrillarin [Canis familiaris]
339.0 [0..31] [313..82]

Back

Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG  60
   61 GARGGRGPAG RGGMKGGSKV IVEPHRHA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.37
Match: 1wckA
Description: Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [89-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVFIAKGKED ALVTKNLVPG EAVYNEKRIS VQNEDGTKTE YRVWNPFRSK LAAAILGGVD  60
   61 NIWIKPGAKV LYLGAASGTT VSHVSDLVGP EGCVYAVEFS HRSGRDLVNM AKKRTNVIPI 120
  121 IEDARHPAKY RMLVGMVDVI FSDVAQPDQA RILALNASYF LKSGGHFVIS IKANCIDSTV 180
  181 PAEAVFQTEV KKLQQEQFKP AEQVTLEPFE RDHACVVGGY RMPKKPKAAT AA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.69897
Match: 2ipxA
Description: No description for 2ipxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle