YRC Public Data Repository - Protein Structure Prediction

Protein:	CDC73_ARATH
Organism:	Arabidopsis thaliana
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC73_ARATH.

Description	E-value	Query Range	Subject Range
gi\|109019026 - gi\|109019026\|ref\|XP_001112553.1\| PREDICTED: similar to hyperparathyroidism 2 homolog isoform 2 [Maca... gi\|125630647, gi... - gi\|87042750\|gb\|ABD16382.1\| hyperparathyroidism 2 with jaw tumor protein [Canis familiaris], gi\|74005... CDC73_MOUSE - Parafibromin OS=Mus musculus GN=Cdc73 PE=1 SV=1 CDC73 - cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) gi\|114568508 - gi\|114568508\|ref\|XP_001167188.1\| PREDICTED: hypothetical protein LOC745351 isoform 2 [Pan troglodyte... tr\|F2Z3T0\|F2Z3T0_RAT - Uncharacterized protein OS=Rattus norvegicus GN=Cdc73 PE=4 SV=1 tr\|M3VUK6\|M3VUK6... - Cell division cycle 73 OS=Felis catus GN=CDC73 PE=4 SV=1 gi\|194673899 - gi\|194673899\|ref\|XP_001787504.1\| PREDICTED: similar to Vcell division cycle 73, Paf1/RNA polymerase ... gi\|190691061, gi... - gi\|190691061\|gb\|ACE87305.1\| cell division cycle 73, Paf1/RNA polymerase II complex component, homolo... tr\|G1TBE7\|G1TBE7... - pep:novel chromosome:oryCun2:16:77557694:77687734:-1 gene:ENSOCUG00000016332 transcript:ENSOCUT00000...	461.0	[0..2]	[414..3]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPLSVLKEF TIRGDIDKIE RVGANYRFGS EYSFPCATET AYRSKSGSLY TLEALVHYVK  60
   61 NQQLKHGEYM QSTVKNSVPA VTLPDRKPLL DYLTGRVASS DSIDFLLLQQ QNAQSQKQNE 120
  121 EYRPDQDNSA FVSRENAIAD MEVEDFGKSG EDVDYIMLIR SNERPLKSRD AILQCKNRDF 180
  181 YSVLVNSTKR EEERQRIESH QRKDGLVAKS RLMGAEERGI VGFSSGGGDD NGYDANPKSK 240
  241 LHFKAGKI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [249-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEGVPIILVP SAFQTLITIY NVKEFLEDGV YIPNDVKAKE MKGLKPDCIT VQKKFSRDRE  60
   61 RVVTAYEVRD KPSALKPDDW DRVVAVFVLG KDWQFKDWPF KDHVEIFNKI IGFFLRFEDD 120
  121 SIESAKTVKQ WNVKIISISK NKRHQDRAAA LEVWEKLEEF VRSRSHS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits