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View Structure Prediction Details

Protein: gi|23505993, gi|...
Organism: Arabidopsis thaliana
Length: 403 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23505993, gi|....

Description E-value Query
Range
Subject
Range
MYO5A_RAT - Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1
202.0 [0..5] [251..694]

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Predicted Domain #1
Region A:
Residues: [1-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI  60
   61 AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN SSVFQIGRSN RRWAQENIAA 120
  121 MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS 180
  181 RSSHSSASFH SSTALLFPSS SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD 240
  241 KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.221849
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #2
Region A:
Residues: [295-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFTPTSRSEY SWGCNNYYYS GYHPNYMANT ESYKAKVRSQ SAPKQRVEVS NETSGYKRSV  60
   61 QGQYYYYTAV EEESLDVGSA GYYGGGGGDS DRLNRNQSAK SRMHSSFLV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle