YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|17065474, gi|...
Organism: Arabidopsis thaliana
Length: 428 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17065474, gi|....

Description E-value Query
Range
Subject
Range
gi|83570737, gi|... - gi|83570737|ref|ZP_00922180.1| COG0820: Predicted Fe-S-cluster redox enzyme [Shigella dysenteriae 10...
365.0 [0..46] [426..2]

Back

Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTTTTNTMA MLQNLVFSVP ISRMVVRRHS LATTFSAAAT TVVPSPKPVS AKPARTPHVD  60
   61 SHVLIGMSEP ELQELAINLG QEGYRGKQLH HLIYKRKVNK VEDFSNLPLT FRKGLVDGGF 120
  121 KVGRSPIYQT VTATDGTIKL LLKLEDNLLI ETVGIPVQD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [160-428]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKGITRLTA CVSSQVGCPL RCSFCATGKG GFSRNLQRHE IIEQVLAIED VFKHRVTNVV  60
   61 FMGMGEPMLN LKSVLDAHRC LNKDIEIGQR MITISTVGVP NTIKKLASHK LQSTLAVSLH 120
  121 APNQSLREKI VPSAKAYPLE AIMKDCRDYF QETNRRVSFE YALLAGVNDQ VEHAVELAEL 180
  181 LREWGKTYHV NLIPYNPIEG SEYQRPYKKA VLAFAAALES RKITASVRQT RGLDASAACG 240
  241 QLRNKFQKSP LLTETDSQES QPDAEAVAC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.39794
Match: 1tv7A
Description: Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.48331922124015 bayes_pls_golite062009
transferase activity 0.685192555939835 bayes_pls_golite062009
binding 0.131941651473395 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle