YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ADSL2_ARATH
Organism: Arabidopsis thaliana
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ADSL2_ARATH.

Description E-value Query
Range
Subject
Range
gi|12698736 - gi|12698736|gb|AAK01666.1| stearoyl-CoA desaturase [Capra hircus]
353.0 [0..7] [298..55]
SCD3_MOUSE - Acyl-CoA desaturase 3 OS=Mus musculus GN=Scd3 PE=1 SV=1
351.0 [0..2] [298..48]
gi|149040241, gi... - gi|7229071|dbj|BAA92436.1| stearoyl-CoA desaturase 2 [Rattus norvegicus], gi|149040241|gb|EDL94279.1...
350.0 [0..7] [298..54]
desat1-PE, desat... - The gene desat1 is referred to in FlyBase by the symbol Dmel\desat1 (CG5887, FBgn0086687). It is a p...
gi|220945722, gi... - gi|220955424|gb|ACL90255.1| desat1-PA [synthetic construct], gi|220945722|gb|ACL85404.1| desat1-PA [...
349.0 [0..8] [298..55]

Back

Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETTKDDGS SQKKSVRKEK RAYVLRKWTQ FDVGRASTVG TVHLLCLLAP FNYKWEAFRF  60
   61 GIILAILTNL CITFSYHRNL THRSFKLPKW LEYPFAYSAL LALQG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [106-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPLDWVSIHR FHHQFTDSDR DPHSPIEGFW FSHVLWIFDT DYIREKCGRR NNVMDLKQQW  60
   61 FYRFLKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.524 N/A N/A a.56.1 CO dehydrogenase ISP C-domain like
View Download 0.524 N/A N/A a.56.1 CO dehydrogenase ISP C-domain like
View Download 0.491 N/A N/A f.14.1 Voltage-gated potassium channels
View Download 0.468 N/A N/A a.3.1 Cytochrome c
View Download 0.460 N/A N/A a.60.8 HRDC-like
View Download 0.460 N/A N/A a.60.8 HRDC-like
View Download 0.456 N/A N/A a.7.17 Description not found.
View Download 0.432 N/A N/A a.144.1 PABC (PABP) domain
View Download 0.432 N/A N/A a.144.1 PABC (PABP) domain
View Download 0.406 N/A N/A a.60.1 SAM/Pointed domain

Predicted Domain #3
Region A:
Residues: [173-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLVLHILAFW TLIYLWGGLP YLTWTVGFGG VIGYHGTWLV NSACHICGSQ AWQTNDTSRN  60
   61 VWWLALLTMG ESWHNNHHAF ETSARHGLEW YQLDITWYLI WFFQALGLAT NVKLPTDAQK 120
  121 RKMAIRR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle