YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|20197292, gi|...
Organism: Arabidopsis thaliana
Length: 519 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20197292, gi|....

Description E-value Query
Range
Subject
Range
gi|14718995 - gi|14718995|gb|AAK73021.1|AF367245_1 ceramide glucosyltransferase [Gossypium arboreum]
307.0 [0..2] [519..3]

Back

Predicted Domain #1
Region A:
Residues: [1-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLDSIDAI LFSLSRAFTS PFAVFVQIQG CTICLLLALG WLLAEYVRNR EVKRIKNSIK  60
   61 AGNSLAFLYQ DINELEHSRQ VKLPRVSVVM PLKGFGEHNL HNWRSQITSL YGGPLEFLFV 120
  121 VESTEDPAYH AVSRLLSMYQ DHVEAKVVVA GLSTTCSQKI HNQLIGVEKM HKDTKYVLFL 180
  181 DDDVRLHPGT IGALTTEMEK NPEIFIQTGY PLDLPSGTLG SYCIYEYHMP CSMGFATGGR 240
  241 TFFLWGGCMM MHADDFRQDR YGVVSGLRDG GYSDDMTLAS LAGAHKRLIT SPPVAVFPHP 300
  301 LASDLSFGRY WNYLRKQTFV LESYISKVNW IMNKALFAVH CYLSWGFVAP YVMAIIHITS 360
  361 ALRIYIKGYH QLEDTTSASG MMLVITLAIC TFIELLSMWN LTRREVQLCN ML

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 2d7iA
Description: No description for 2d7iA was found.

Predicted Domain #2
Region A:
Residues: [413-519]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPEAPRLSLA TYNWGLVFVA MLVDNFLYPI SAFRSHFSQS INWSGIRYHL KDGKIFKIER  60
   61 RKDMGPTKTD LGGKHLYGKK GAPQKASFLS SLGRNLAHWR QPKKFDV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle