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View Structure Prediction Details

Protein: PTR39_ARATH
Organism: Arabidopsis thaliana
Length: 558 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR39_ARATH.

Description E-value Query
Range
Subject
Range
PTR1_ARATH - Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana GN=NPF8.1 PE=1 SV=1
322.0 [0..3] [543..5]

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Predicted Domain #1
Region A:
Residues: [1-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLVSGDKE AQISGDPGSK RGGWITFPFM LATLLGLSVT SFGWVMNLIV FLIEEFNIKS  60
   61 IAAAQISNVA NGCLSMLPVV AAILADSFFG NIPVIAASSF ISLLGIVLLT LIASLDYLRP 120
  121 RPCEAGSVLC TPPSKLHLGI LYTALALVTT GAGGTRFTMA SAGANQYEKP KEQGSFFNWY 180
  181 FLTLYAGAIT GATAIVYIQD NASWKLGFGL CAAANLISFI VFVSGKRYYK HDKPMGSPFT 240
  241 SLIRVVVSAT VKRKAVISCN EEDYHHYGLE KEVKTSAAMP SKSFRFLNRA ALMTKDDLNQ 300
  301 KEGSVNNIWR LCSVQEVEDF KAILRVFPLW LSIIFVSTPM VMQTSLIVLQ ALVTDRGLGP 360
  361 NFKVPAGSLQ VIIIITACIV IIMNNWLVFP MY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.522879
Match: 2gfpA
Description: No description for 2gfpA was found.

Predicted Domain #2
Region A:
Residues: [393-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKLTHKLLTP LQKVGIGQVL TILSMALSAV VEAKRLKTVE NGHPMSVLWL FPPLVIVGIG  60
   61 EAFQFPANIE LFYGEFPESL RNTATSLTSV VIGISFYLST ALIDLIQRTT AWLPNDINHG 120
  121 RVDNVYWLLV IGGILNFGYF LVCSWVYKYR NLKDNDQEQD PKDGTM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.58
Match: 2v8nA
Description: No description for 2v8nA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle