| Protein: | NRPD1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1453 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRPD1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
1027.0 | [0..1] | [1293..1] |
|
Region A: Residues: [1-1154] |
1 11 21 31 41 51
| | | | | |
1 MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG 60
61 SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC KYIRKKQFQI TEDQPERCRY 120
121 CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID 180
181 ESCLKPTRRI ITHAQVYALL LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN 240
241 GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT 300
301 PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER 360
361 LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS LMDGDTVLMN RPPSIHQHSL 420
421 IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR 480
481 QNGRNLLSLG QDSLTAAYLV NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ 540
541 WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV 600
601 LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM 660
661 VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA VSAFKDAYRD VQALAYRYGD 720
721 QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK 780
781 GKDSTTTESY VPYGVIENSF LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR 840
841 DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL 900
901 ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV 960
961 STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES VVSSLNEQYK SRNRELKLDI1020
1021 VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ1080
1081 GIKKVNILWT DRPKAPKRNG NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG1140
1141 RSHPDNIRQC CSVY
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1i3qA |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1155-1321] |
1 11 21 31 41 51
| | | | | |
1 GIDAGRSIFV ANLESAVSDT GKEILREHLL LVADSLSVTG EFVALNAKGW SKQRQVESTP 60
61 APFTQACFSS PSQCFLKAAK EGVRDDLQGS IDALAWGKVP GFGTGDQFEI IISPKVHGFT 120
121 TPVDVYDLLS STKTMRRTNS APKSDKATVQ PFGLLHSAFL KDIKVLD
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 1l9uD |
| Description: | DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1322-1453] |
1 11 21 31 41 51
| | | | | |
1 GKGIPMSLLR TIFTWKNIEL LSQSLKRILH SYEINELLNE RDEGLVKMVL QLHPNSVEKI 60
61 GPGVKGIRVA KSKHGDSCCF EVVRIDGTFE DFSYHKCVLG ATKIIAPKKM NFYKSKYLKN 120
121 GTLESGGFSE NP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
