YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CDA9_ARATH
Organism: Arabidopsis thaliana
Length: 298 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDA9_ARATH.

Description E-value Query
Range
Subject
Range
gi|3818577 - gi|3818577|gb|AAC69568.1| cytidine deaminase 3 [Arabidopsis thaliana]
326.0 [0..1] [297..1]

Back

Predicted Domain #1
Region A:
Residues: [1-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQPPNPYAA LTPTEAESSG PFEPETLLPL INRALPLAQA LPSQSPLVAV GRGSSGRTFL  60
   61 GVNVELPGLS PLHSIHAGQF LVVHLALNNE RTLNCLAFSS NGSYFDPPCP HCCQLLQEIR 120
  121 NASSTKLLIT DPSRQRDMSL STYLPQKYLS LYNEVPKYFF ARLLDENRNN GLTLINPNPI 180
  181 RDCLDSEICN HLSCRALKAA NRSYAPYSKS PSGVALMDFQ GRVYSGWSIE SVANPILGAA 240
  241 QAALVDFMTN GGGHEFNNIV RGFLVEKRDA KLSHLATARE ILNKVAHFSF ILRVLHCQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.69897
Match: 1af2A
Description: Two-domain cytidine deaminase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.177505784657 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle