YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21592698, gi\|...
Organism:	Arabidopsis thaliana
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21592698, gi|....

Description	E-value	Query Range	Subject Range
orf19.12069, orf... - orf19.4600 CGDID:CAL0003579 Assembly 19, Contig19-10212 (75114, 75821) CDS, translated using codon t... gi\|238881646 - gi\|238881646\|gb\|EEQ45284.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|68466380, gi\|... - gi\|68466380\|ref\|XP_722672.1\| hypothetical protein CaO19.4600 [Candida albicans SC5314], gi\|68466085\|...	137.0	[0..39]	[135..66]
YP107_YEAST - UPF0651 protein YPL107W, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=Y... YPL107W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mi...	130.0	[0..31]	[135..10]
gi\|45201310, gi\|... - gi\|45201310\|ref\|NP_986880.1\| AGR214Cp [Ashbya gossypii ATCC 10895], gi\|44986164\|gb\|AAS54704.1\| AGR21... gi\|44986164 - gi\|44986164\|gb\|AAS54704.1\| AGR214Cp [Ashbya gossypii ATCC 10895]	118.0	[0..36]	[135..73]
gi\|49526364, gi\|... - gi\|50289249\|ref\|XP_447055.1\| unnamed protein product [Candida glabrata], gi\|49526364\|emb\|CAG59988.1\|... gi\|49526364 - gi\|49526364\|emb\|CAG59988.1\| unnamed protein product [Candida glabrata]	116.0	[0..23]	[135..1]
gi\|49652766, gi\|... - gi\|50412052\|ref\|XP_457101.1\| hypothetical protein DEHA0B03135g [Debaryomyces hansenii CBS767], gi\|49...	115.0	[0..40]	[135..66]
gi\|49644196 - gi\|49644196\|emb\|CAH00148.1\| KLLA0E24619p [Kluyveromyces lactis] gi\|49644196, gi\|... - gi\|50310095\|ref\|XP_455061.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644196\|emb\|CAH0014...	104.0	[0..24]	[135..8]
gi\|49103290, gi\|... - gi\|67541675\|ref\|XP_664605.1\| hypothetical protein AN7001.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	101.0	[0..50]	[124..105]
gi\|145015314, gi... - gi\|39968885\|ref\|XP_365833.1\| hypothetical protein MGG_10053 [Magnaporthe grisea 70-15], gb\|EAA49889....	100.0	[0..58]	[135..116]
gi\|83775296 - gi\|83775296\|dbj\|BAE65418.1\| unnamed protein product [Aspergillus oryzae] gi\|169784179 - gi\|169784179\|ref\|XP_001826551.1\| hypothetical protein [Aspergillus oryzae RIB40]	99.0	[0..16]	[134..100]
gi\|42550285, gi\|... - gi\|46127791\|ref\|XP_388449.1\| hypothetical protein FG08273.1 [Gibberella zeae PH-1], gi\|42550285\|gb\|E...	99.0	[0..50]	[135..83]

Back

Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVVSLLPRI SIVTSPGSSL HDVLLSMRFG LTRHLPLKRS FSNYSITSVS PEQQLKSPVT  60
   61 MATTESKNLV EASKEETNKK ETEDKKEVGV SVPPPPEKPE PGDCCGSGCV RCVWDVYYDE 120
  121 LEDYNKQLSG ETKSI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.455	c.23.1	CheY-like
View	Download	0.329	a.25.1	Ferritin-like
View	Download	0.293	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.293	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.270	d.276.1	Description not found.
View	Download	0.251	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.244	c.48.1	TK C-terminal domain-like
View	Download	0.201	a.25.1	Ferritin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits