YRC Public Data Repository - Protein Structure Prediction

Protein:	PHR2_ARATH
Organism:	Arabidopsis thaliana
Length:	447 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHR2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21592984 - gi\|21592984\|gb\|AAM64933.1\| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]	348.0	[0..1]	[447..1]
gi\|30315019 - gi\|30315019\|gb\|AAP30741.1\|AF500083_1 photolyase [Fusarium oxysporum]	300.0	[0..4]	[447..28]
gi\|38109286, gi\|... - gi\|39977903\|ref\|XP_370339.1\| hypothetical protein MG06836.4 [Magnaporthe grisea 70-15], gb\|EAA55179....	291.0	[0..9]	[447..34]
gi\|92878315 - gi\|92878315\|gb\|ABE84974.1\| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula]	290.0	[0..56]	[447..58]
gi\|46107828, gi\|... - gi\|46107828\|ref\|XP_380973.1\| hypothetical protein FG00797.1 [Gibberella zeae PH-1], gi\|42547900\|gb\|E...	290.0	[0..4]	[447..36]
PHR_NEUCR - Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 ... PHR_NEUCR - Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa GN=phr-1 PE=3 SV=1	283.0	[0..5]	[446..23]
gi\|3947746 - gi\|3947746\|emb\|CAA08916.1\| DNA photolyase [Hypocrea lixii]	270.0	[0..8]	[445..37]
gi\|110962429 - gi\|110962429\|gb\|ABH03083.1\| cryptochrome 1b [Sylvia borin]	268.0	[0..113]	[447..1]
gi\|70990122, gi\|... - gi\|70990122\|ref\|XP_749910.1\| deoxyribodipyrimidine photo-lyase Phr1 [Aspergillus fumigatus Af293], g... gi\|159130392 - gi\|159130392\|gb\|EDP55505.1\| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus fumigatus ...	268.0	[0..10]	[445..1]
gi\|83770999 - gi\|83770999\|dbj\|BAE61131.1\| unnamed protein product [Aspergillus oryzae] gi\|169775595 - gi\|169775595\|ref\|XP_001822264.1\| hypothetical protein [Aspergillus oryzae RIB40]	267.0	[0..3]	[446..22]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP  60
   61 TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV PRRPVDPSSA AA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.249	d.15.1	Ubiquitin-like

Predicted Domain #2

Region A:
Residues: [113-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRRAAVVWFR NDLRVHDNEC LNSANDECVS VLPVYCFDPR DYGKSSSGFD KTGPFRAQFL  60
   61 IESVSELRKN LQARGSNLVV RVGKPEAVLV ELAKEIGADA VYAHREVSHD EVKAEGKIET 120
  121 AMKEEGVEVK YFWGSTLYHL DDLPFKIEDL PSNYGAFKDK VQKLEIRKTI AALDQLKSLP 180
  181 SRGDVELGDI PSLLDLGISP TPRTSQEGKP TMVGGETEAL TRLKSFAADC QARLSKGNQK 240
  241 GGNNSVFGAN FSCKISPWLA MGSISPRSMF DELKKTISAS TTSTTPRNGP GDTGLNWLMY 300
  301 ELLWRDFFRF ITKKYSSAKT QVEAGPATAC TGAFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.522879
Match:	1np7A
Description:	Cryptochrome C-terminal domain; Cryptochrome
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits