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View Structure Prediction Details

Protein: AB4C_ARATH
Organism: Arabidopsis thaliana
Length: 1516 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for AB4C_ARATH.

Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLLSSSPWL SELSCSYSAV VEHTSSVPVP IQWLRFVLLS PCPQRALFSA VDFIFLLCFA  60
   61 LHKLFSSPSS SSEINGHAEI RKPLIGIRGR TPTRTTAWFK TTVAVTVLLS FCSVVLCVLA 120
  121 FTGKRRTQRP WNLIDPLFWL IHAVTHLVIA VLVLHQKRFA ALNHPLSLRI YWISSFVLTS 180
  181 LFAVTGIFHF LSDAATSLRA EDVASFFSFP LTAFLLIASV RGITGLVTAE TN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [233-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTKPSDAVS VEKSDNVSLY ASASVFSKTF WLWMNPLLSK GYKSPLTLEQ VPTLSPEHKA  60
   61 ERLALLFESS WPKPSENSSH PIRTTLLRCF WKEILFTAIL AIVRLGVMYV GPVLIQSFVD 120
  121 FTSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [357-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRSSPWQGYY LVLILLVAKF VEVLTTHQFN FDSQKLGMLI RSTLITALYK KGLKLTGSAR  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [417-639]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNHGVGQIVN YMAVDAQQLS DMMLQLHAIW LMPLQVTVAL VLLYGSLGAS VITAVIGLTG  60
   61 VFVFILLGTQ RNNGYQFSLM GNRDSRMKAT NEMLNYMRVI KFQAWENHFN KRILKFRDME 120
  121 FGWLSKFLYS IAGNIIVLWS TPVLISALTF ATALALGVKL DAGTVFTTTT IFKILQEPIR 180
  181 TFPQSMISLS QAMISLGRLD SYMMSKELSE DAVERALGCD GNT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [640-921]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVEVRDGSFS WDDEDNEPAL SDINFKVKKG ELTAIVGTVG SGKSSLLASV LGEMHRISGQ  60
   61 VRVCGSTGYV AQTSWIENGT VQDNILFGLP MVREKYNKVL NVCSLEKDLQ MMEFGDKTEI 120
  121 GERGINLSGG QKQRIQLARA VYQECDVYLL DDVFSAVDAH TGSDIFKKCV RGALKGKTVL 180
  181 LVTHQVDFLH NVDCILVMRD GKIVESGKYD ELVSSGLDFG ELVAAHETSM ELVEAGADSA 240
  241 AVATSPRTPT SPHASSPRTS MESPHLSDLN DEHIKSFLGS HI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.0
Match: 2cbzA
Description: No description for 2cbzA was found.

Predicted Domain #6
Region A:
Residues: [922-1516]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEDGSKLIKE EERETGQVSL GVYKQYCTEA YGWWGIVLVL FFSLTWQGSL MASDYWLAYE  60
   61 TSAKNAISFD ASVFILGYVI IALVSIVLVS IRSYYVTHLG LKTAQIFFRQ ILNSILHAPM 120
  121 SFFDTTPSGR ILSRASTDQT NVDILIPFML GLVVSMYTTL LSIFIVTCQY AWPTAFFVIP 180
  181 LGWLNIWYRN YYLASSRELT RMDSITKAPI IHHFSESIAG VMTIRSFRKQ ELFRQENVKR 240
  241 VNDNLRMDFH NNGSNEWLGF RLELVGSWVL CISALFMVLL PSNVIRPENV GLSLSYGLSL 300
  301 NSVLFFAIYM SCFVENKMVS VERIKQFTDI PSESEWERKE TLPPSNWPFH GNVHLEDLKV 360
  361 RYRPNTPLVL KGITLDIKGG EKVGVVGRTG SGKSTLIQVL FRLVEPSGGK IIIDGIDIST 420
  421 LGLHDLRSRF GIIPQEPVLF EGTVRSNIDP TEQYSDEEIW KSLERCQLKD VVATKPEKLD 480
  481 SLVVDNGENW SVGQRQLLCL GRVMLKRSRL LFLDEATASV DSQTDAVIQK IIREDFASCT 540
  541 IISIAHRIPT VMDGDRVLVI DAGKAKEFDS PARLLERPSL FAALVQEYAL RSAGI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 152.0
Match: 3b5xA
Description: No description for 3b5xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle