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View Structure Prediction Details

Protein: LPAT3_ARATH
Organism: Arabidopsis thaliana
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPAT3_ARATH.

Description E-value Query
Range
Subject
Range
LPAT2_BRANA - 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica napus GN=LPAT2 PE=2 SV=1
280.0 [0..4] [372..3]

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Predicted Domain #1
Region A:
Residues: [1-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIPAALVFI PVGVLFLISG LIVNIIQLVF FIIVRPFSRS LYRRINKNVA ELLWLQLIWL  60
   61 FDWWACIKIN LYVDAETLEL IGKEHALVLS NHRSDIDWLI GWVMAQRVGC LGSSLAIMKK 120
  121 EAKYLPIIGW SMWFSDYIFL ERSWAKDENT LKAGFKRLED FPMTFWLALF VEGTRFTQEK 180
  181 LEAAQEYASI RSLPSPRNVL IPRTKGFVSA VSEIRSFVPA IYDCTLTVHN NQPTPTLLRM 240
  241 FSGQSSEINL QMRRHKMSEL PETDDGIAQW CQDLFITKDA QLEKYFTKDV FS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.11
Match: 1k30A
Description: Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [293-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLEVHQINRP IKPLIVVIIW LGFLVFGGFK LLQWLSIVAS WKIILLFVFF LVIATITMQI  60
   61 LIQSSESQRS TPAKRPLQEQ LISA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle