| Protein: | gi|25404813, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 330 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25404813, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
213.0 | [0..30] | [273..4] |
|
|
213.0 | [0..33] | [277..447] |
|
|
212.0 | [0..30] | [277..4] |
|
|
211.0 | [0..33] | [323..131] |
|
|
211.0 | [0..30] | [272..16] |
|
Region A: Residues: [1-228] |
1 11 21 31 41 51
| | | | | |
1 MEMVHADVAS LSITPCFPSS LSSSSHHHYN QQQHCIMSED QHHSMDQTTS SDYFSLNIDN 60
61 AQHLRSYYTS HREEDMNPNL SDYSNCNKKD TTVYRSCGHS SKASVSRGHW RPAEDTKLKE 120
121 LVAVYGPQNW NLIAEKLQGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL MQAHRLYGNK 180
181 WAMIARLFPG RTDNSVKNHW HVIMARKFRE QSSSYRRRKT MVSLKPLI
|
| Detection Method: |  |
| Confidence: | 43.69897 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [229-330] |
1 11 21 31 41 51
| | | | | |
1 NPNPHIFNDF DPTRLALTHL ASSDHKQLML PVPCFPGYDH ENESPLMVDM FETQMMVGDY 60
61 IAWTQEATTF DFLNQTGKSE IFERINEEKK PPFFDFLGLG TV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.642 | d.93.1 | SH2 domain |
| View | Download | 0.642 | d.93.1 | SH2 domain |
| View | Download | 0.582 | d.93.1 | SH2 domain |
| View | Download | 0.537 | d.93.1 | SH2 domain |
| View | Download | 0.537 | d.93.1 | SH2 domain |
| View | Download | 0.513 | d.93.1 | SH2 domain |
| View | Download | 0.509 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.489 | d.93.1 | SH2 domain |
| View | Download | 0.473 | a.24.18 | Description not found. |
| View | Download | 0.442 | a.4.1 | Homeodomain-like |
| View | Download | 0.337 | d.93.1 | SH2 domain |
| View | Download | 0.314 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.302 | d.37.1 | CBS-domain |
| View | Download | 0.253 | d.360.1 | Description not found. |
| View | Download | 0.218 | d.58.4 | Dimeric alpha+beta barrel |
