YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|25404692, gi|...
Organism: Arabidopsis thaliana
Length: 363 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25404692, gi|....

Description E-value Query
Range
Subject
Range
gi|37904506 - gi|37904506|gb|AAP57211.1| methyl transferase [Arabidopsis lyrata subsp. lyrata]
491.0 [0..9] [363..27]

Back

Predicted Domain #1
Region A:
Residues: [1-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVEIVRNS LPMSGGDGPN SYSKNSHLQR KTTSLLKEKI DKLVLEKLNA KTLISSDSNT  60
   61 FRIADLGCAT GPNTFFLVDN IIKSIETSLR KSNSSKPEFL VFFNDLPQND FNTLFTSLPQ 120
  121 DRSYLAVGVP GSFYGRVLPQ SSVHIVVTMG ATHWLSSVPK EVLDKSSKAW NKGKVHYSNA 180
  181 ADEVVKAYRD QFGRDMEKFL EARATEIVSG GLLVVGMCGI PKGMPFSNLA DSIMYTSMAD 240
  241 VLTQMHSEGL ISEEQVDTFN IPIYSATPEE VTVLVVKNGC FTVESMELMD PTAWLKRPTN 300
  301 VEDVRHWMVC IKATMGSLFI NHFGEHLLDD VFDRLTAKLV GLTEKIESSY REKVMLFFAL 360
  361 QRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 132.0
Match: 1m6eX
Description: CRYSTAL STRUCTURE OF SALICYLIC ACID CARBOXYL METHYLTRANSFERASE (SAMT)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle