YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|4388826, gi|1...
Organism: Arabidopsis thaliana
Length: 359 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4388826, gi|1....

Description E-value Query
Range
Subject
Range
gi|58201458 - gi|58201458|gb|AAW66850.1| SAMT [Nicotiana tabacum]
515.0 [0..1] [358..9]

Back

Predicted Domain #1
Region A:
Residues: [1-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGGTGDHSY ATNSHYQRSV FYEIQPLVIE NVREMLLKNG FPGCIKVADL GCSTGQNTVL  60
   61 AMSAIAYTIM ESYQQMSKNP PEIDCYLNDL PENDFNTTFK LFHSFQEKLK PEVKGKWFVS 120
  121 GVPGSFYSRL FPRKSLHFVH SAFSIHWLSR IPDGLESNTK SIHIKYPYPS NVYKSYLNQF 180
  181 KIDFSLFLKM RSEEVVHNGH MVLTFVGRKV SDTLSKDCFQ VWSLLSDCLL DLASEGFVND 240
  241 SMVKSFNMPF YNPNEEEVRE FILKEGSFEI TKIEKFDHVV PYKIDREEED EEQSLQLEAG 300
  301 IKHASWARCI TEPLLVAHFG DAIIEPVFNK YAHYMAKYLS VSNHRRNMTL VIVVSLTRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 132.0
Match: 1m6eX
Description: CRYSTAL STRUCTURE OF SALICYLIC ACID CARBOXYL METHYLTRANSFERASE (SAMT)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle