YRC Public Data Repository - Protein Structure Prediction

Protein:	RL342_ARATH
Organism:	Arabidopsis thaliana
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL342_ARATH.

Description	E-value	Query Range	Subject Range
gi\|109094513 - gi\|109094513\|ref\|XP_001107418.1\| PREDICTED: similar to ribosomal protein L34 [Macaca mulatta]	172.0	[0..1]	[117..28]
gi\|125776087, gi... - gi\|54638906\|gb\|EAL28308.1\| GA19343-PA [Drosophila pseudoobscura], gi\|125776087\|ref\|XP_001359164.1\| G...	167.0	[0..1]	[113..1]
gi\|89628429 - gi\|89628429\|gb\|ABD77505.1\| 60S ribosomal protein L34-like protein [Ovis aries]	166.0	[0..1]	[115..12]
gi\|47206357 - gi\|47206357\|emb\|CAG12549.1\| unnamed protein product [Tetraodon nigroviridis]	164.0	[0..1]	[117..1]
gi\|60834772 - gi\|60834772\|gb\|AAX37110.1\| ribosomal protein L34 [synthetic construct]	164.0	[0..1]	[117..1]
gi\|70989179, gi\|... - gi\|70989179\|ref\|XP_749439.1\| ribosomal protein L34 protein [Aspergillus fumigatus Af293], gi\|6684707... gi\|159128850 - gi\|159128850\|gb\|EDP53964.1\| ribosomal protein L34 protein, putative [Aspergillus fumigatus A1163]	164.0	[0..12]	[113..88]
RL34_MOUSE - 60S ribosomal protein L34 OS=Mus musculus GN=Rpl34 PE=1 SV=2 gi\|55715856 - gb\|AAH86096.1\| Unknown (protein for MGC:98475) [Xenopus laevis] gi\|55742885, gi\|... - ref\|NP_081000.1\| ribosomal protein L34 [Mus musculus], ref\|NP_001005859.1\| ribosomal protein L34 [M...	164.0	[0..1]	[117..1]
gi\|50369170, gi\|... - gi\|89268915\|emb\|CAJ83240.1\| ribosomal protein L34b [Xenopus tropicalis], gi\|52346120\|ref\|NP_00100510...	164.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPT  60
   61 EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ KIVKKVLKLQ KAKEKVAPK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2egqA
Description:	No description for 2egqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits