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View Structure Prediction Details

Protein: FBK54_ARATH
Organism: Arabidopsis thaliana
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBK54_ARATH.

Description E-value Query
Range
Subject
Range
FB167_ARATH - Putative F-box protein At3g20030 OS=Arabidopsis thaliana GN=At3g20030 PE=4 SV=1
200.0 [0..1] [394..1]

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Predicted Domain #1
Region A:
Residues: [1-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK  60
   61 DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV FHCDGLVLCI IKDNTGLLVW 120
  121 NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW 180
  181 KVLDVIPEWD IQSHFRGASL KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL 240
  241 PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #2
Region A:
Residues: [286-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNTVSWSKFL ITSTGFPVDT FSGSFFIDEE KKVAVVFDLD RYKPTETCRY QIVYIIGQDE  60
   61 YFKSVNMGVA PNIAKNSYQA YCVPLVCSSS YVPSLVQLQI NKPGKRKESN 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 21.537602
Match: PF07734.4
Description: No description for PF07734.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle