| Protein: | VSR2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 625 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSR2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
424.0 | [0..23] | [624..24] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MRTTNVWLVV IVWVTVGWSS CTGRFVVEKN NLRVTSPESI RGVYECALGN FGVPQYGGSM 60
61 SGAVVYPKTN QKACKNFDDF EISFRSRVAG LPTFVLVDRG DCYFTLKAWN AQRAGAATIL 120
121 VADNRPEQLI TMDAPEDETS DADYLQNITI PSALVSRSLG SAIKTAIAHG DPVHISLDWR 180
181 EAL
|
| Detection Method: |  |
| Confidence: | 16.0 |
| Match: | 1xf1A |
| Description: | Structure of C5a peptidase- a key virulence factor from Streptococcus |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [184-625] |
1 11 21 31 41 51
| | | | | |
1 PHPNDRVAYE LWTNSNDECG SKCDAQIRFL KRFKGAAQIL EKGGYTRFTP HYITWYCPEA 60
61 FLASRQCKTQ CINGGRYCAP DPEQDFSRGY NGKDVIIQNL RQACFFRVTN ESGKPWLWWD 120
121 YVTDFAIRCP MKEEKYNKKC ADQVIQSLGV DVKKIDKCIG DIDANAENPV LKEEQVAQVG 180
181 KGSRGDVTIL PTIVINNRQY RGKLQRSAVL KALCSGFRET TEPPICLTED IETNECLQNN 240
241 GGCWEDKTTN ITACRDTFRG RVCQCPIVQG VKFLGDGYTH CEASGALRCG INNGGCWKQT 300
301 QMGKTYSACR DDHSKGCKCP PGFIGDGLKE CKDVNECEEK TACQCRDCKC KNTWGSYECS 360
361 CSGSLLYIRE HDICINRDAR GDFSWGVIWI IIMGLGAAAL GAYTVYKYRI RTYMDSEIRA 420
421 IMAQYMPLDN NPNTQLSSQL EL
|
| Detection Method: | |
| Confidence: | 24.30103 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
