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View Structure Prediction Details

Protein: gi|25369340, gi|...
Organism: Arabidopsis thaliana
Length: 342 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25369340, gi|....

Description E-value Query
Range
Subject
Range
gi|15230893, gi|... - gi|225194907|gb|ACN81954.1| C-terminal domain phosphatase-like 5 [Arabidopsis thaliana], gi|15230893...
272.0 [0..1] [282..295]

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Predicted Domain #1
Region A:
Residues: [1-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIENSCLE PESKTATLIC GHFFVRYGIC CNCRSTVDRD YGRAFDYLVH GLQLSHKAVA  60
   61 VTKSLTTQLA CLNERKLHLV LDLDHTLLHS IMISRLSEGE KYLLGESDFR EDLWTLDREM 120
  121 LIKLRPFVHE FLKEANEIFS MYVYTMGNRD YAQAVLKWID PKKVYFGDRV ITRDESGFSK 180
  181 TLDLVLADEC GVVIVDDTRH VWPDHERNLL QITKYSYFRD YSHDKESKSY AEEKRDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.154902
Match: 2hhlA
Description: No description for 2hhlA was found.

Predicted Domain #2
Region A:
Residues: [238-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRNQGSLANV LKVLKDVHQE FFRGGIEELD SKDVRLLLQE QHIAVSIKIC SQNLSHQKQM  60
   61 SPFISGSNKH ENVKFYKSQS MELDTITGTG SRVYSSSEEH CLVCT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.508 N/A N/A g.41.5 Rubredoxin-like
View Download 0.499 N/A N/A d.200.1 Integrin beta tail domain
View Download 0.457 N/A N/A a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators
View Download 0.416 N/A N/A a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators
View Download 0.398 N/A N/A a.39.1 EF-hand


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle