YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|5903084, gi|1...
Organism: Arabidopsis thaliana
Length: 379 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5903084, gi|1....

Description E-value Query
Range
Subject
Range
gi|27764542 - gi|27764542|gb|AAO23072.1| R 14 protein [Glycine max]
312.0 [0..1] [378..1]

Back

Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSSNTLPK FDVFLSFRGL DTRRSFISFL YKELIRRNIR TFKDDKELKN GRRITPELIR  60
   61 AIEGSRFAVV VVSVNYAASR WCLEELVKIM DFENMGSLKV MPIFYGVDPC HVRRQIGEVA 120
  121 EQFKKHEGRE DHEKVLSWRQ ALTNLASISG DCSWKWEDDS KMVEEITDRI SKELMIDTTR 180
  181 SNGSDLEGID AHMKALHRLL NL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 2j67A
Description: No description for 2j67A was found.

Predicted Domain #2
Region A:
Residues: [203-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSKKSVRVIG IWARGGNGRS ALAKFVYQNI CQHFESHCFL ESVKRISQDR HLSHLHEEFM  60
   61 IRIQGECLSK LRLKNQKVLL VADDVNKLEQ LDALAEDFNC FGPGSIVIIT TQDRQLLISA 120
  121 GIKLVYEVEL LRFQKVRGLF RQLAFKEKDI SAAFEVSLYR ATNVAMEWLG CICGRSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.09691
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle