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View Structure Prediction Details

Protein: CSLD1_ARATH
Organism: Arabidopsis thaliana
Length: 1036 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CSLD1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSPPKKTL NSQSSSLSRP PQAVKFGRRT SSGRIVSLSR DDDMDVSGDY SGQNDYINYT  60
   61 VLMPPTPDNQ PAGSSGSTSE SKGDANRGGG GGDGPKMGNK LERRLSVMKS NNKSMLLRSQ 120
  121 TGDFDHNRWL FESKGKYGIG NAFWSEEDDT YDGGVSKSDF LDKPWKPLTR KVQIPAKILS 180
  181 PYRLLIVIRL VIVFFFLWWR ITNP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-801]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEDAMWLWGL SIVCEIWFAF SWILDILPKL NPINRATDLA ALHDKFEQPS PSNPTGRSDL  60
   61 PGVDVFVSTA DPEKEPPLVT ANTLLSILAV DYPIEKLSAY ISDDGGAILT FEAMAEAVRF 120
  121 AEYWVPFCRK HDIEPRNPDS YFSIKKDPTK NKKRQDFVKD RRWIKREYDE FKVRINGLPE 180
  181 QIKKRAEQFN MREELKEKRI AREKNGGVLP PDGVEVVKAT WMADGTHWPG TWFEPKPDHS 240
  241 KGDHAGILQI MSKVPDLEPV MGGPNEGALD FTGIDIRVPM FAYVSREKRP GFDHNKKAGA 300
  301 MNGMVRASAI LSNGAFILNL DCDHYIYNSK AIKEGMCFMM DRGGDRICYI QFPQRFEGID 360
  361 PSDRYANHNT VFFDGNMRAL DGLQGPVYVG TGCMFRRYAL YGFNPPRANE YSGVFGQEKA 420
  421 PAMHVRTQSQ ASQTSQASDL ESDTQPLNDD PDLGLPKKFG NSTMFTDTIP VAEYQGRPLA 480
  481 DHMSVKNGRP PGALLLPRPP LDAPTVAEAI AVISCWYEDN TEWGDRIGWI YGSVTEDVVT 540
  541 GYRMHNRGWR SVYCITKRDA FRGTAPINLT DRLHQVLRWA TGSVEIFFSK NNAMFAT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 2z87A
Description: No description for 2z87A was found.

Predicted Domain #3
Region A:
Residues: [802-1036]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRLKFLQRVA YLNVGIYPFT SIFLVVYCFL PALCLFSGKF IVQSLDIHFL SYLLCITVTL  60
   61 TLISLLEVKW SGIGLEEWWR NEQFWLIGGT SAHLAAVVQG LLKVIAGIEI SFTLTSKASG 120
  121 EDEDDIFADL YIVKWTGLFI MPLTIIIVNL VAIVIGASRT IYSVIPQWGK LMGGIFFSLW 180
  181 VLTHMYPFAK GLMGRRGKVP TIVYVWSGLV SITVSLLWIT ISPPDDVSGS GGISV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle