YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186510240, gi...
Organism:	Arabidopsis thaliana
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186510240, gi....

Description	E-value	Query Range	Subject Range
gi\|15230893, gi\|... - gi\|225194907\|gb\|ACN81954.1\| C-terminal domain phosphatase-like 5 [Arabidopsis thaliana], gi\|15230893...	250.0	[0..1]	[309..1]
gi\|114586012 - gi\|114586012\|ref\|XP_001170973.1\| PREDICTED: small CTD phosphatase 3 isoform 1 [Pan troglodytes]	248.0	[0..2]	[280..5]
gi\|2289786, gi\|5... - ref\|NP_005799.1\| small CTD phosphatase 3 [Homo sapiens], gi\|2289786\|dbj\|BAA21667.1\| HYA22 [Homo sap...	247.0	[0..2]	[270..80]
gi\|76648310 - gi\|76648310\|ref\|XP_872486.1\| PREDICTED: similar to CTD small phosphatase-like protein (CTDSP-like) (...	246.0	[0..2]	[268..5]
gi\|6572954 - gi\|6572954\|gb\|AAF17482.1\|AF189774_1 NLI-interacting factor isoform T2; NLI/Ldb1/CLIM interacting fac...	246.0	[0..2]	[270..5]
gi\|115495067, gi... - gi\|115495067\|ref\|NP_001070083.1\| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) sma...	245.0	[0..2]	[269..5]
gi\|92399505 - gi\|92399505\|gb\|ABE76501.1\| SCP3-like protein [Mustela putorius furo]	245.0	[0..2]	[268..5]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVAKNLSPE RESKRQKKEP EIMEPSFPLL SPNNCGHWYI RYGFCIVCKS TVDKTIEGRV  60
   61 FDGLHLSSEA LALTKRLITK FSCLNMKKLH LVLDLDLTLI HSVRVPCLSE AEKYLIEEAG 120
  121 STTREDLWKM KVRGDPISIT IEHLVKLRPF LCEFLKEANE MFTMYVYTKG TRPYAEAILK 180
  181 LIDPKKLYFG HRVITRNESP HTKTLDMVLA DERGVVIVDD TRKAWPNNKS NLVLIGRYNY 240
  241 FRSQSRVLKP HSEEKTDESE NNGGLANVLK LLKGIHHKFF KVEEEVESQD VRLLLKDIEF 300
  301 VRRRFMCKMI SLSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.39794
Match:	2hhlA
Description:	No description for 2hhlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits