YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15231611, gi\|...
Organism:	Arabidopsis thaliana
Length:	1019 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15231611, gi|....

Description	E-value	Query Range	Subject Range
gi\|92886171 - gi\|92886171\|gb\|ABE88173.1\| Glycosyl hydrolases family 38 C-terminal domain, putative [Medicago trunc...	913.0	[0..6]	[1003..13]
gi\|113638749, gi... - gi\|222612422\|gb\|EEE50554.1\| hypothetical protein OsJ_30682 [Oryza sativa Japonica Group], gi\|1154810...	897.0	[0..26]	[1003..26]
gi\|79598781, gi\|... - gi\|79598781\|ref\|NP_851037.2\| glycosyl hydrolase family 38 protein [Arabidopsis thaliana], gi\|2319818...	886.0	[0..1]	[1009..1]
gi\|197101359 - gi\|197101359\|ref\|NP_001127406.1\| mannosidase, alpha, class 2B, member 1 [Pongo abelii] gi\|55729221 - gi\|55729221\|emb\|CAH91346.1\| hypothetical protein [Pongo abelii]	862.0	[0..22]	[1007..48]
MA2B1_MACFA - Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1	860.0	[0..23]	[1007..49]
MA2B1_BOVIN, M2B... - Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3, (Q29451) Lysosomal alpha-mannosidase ...	859.0	[0..12]	[1008..38]
gi\|3522867 - gi\|3522867\|gb\|AAC34130.1\| lysosomal alpha-mannosidase [Homo sapiens]	858.0	[0..23]	[1007..48]

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Predicted Domain #1

Region A:
Residues: [1-1019]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKCFSLYL ILAAIVIGGV TSEYIEYNTK PRIVPEKINV HLVPHSHDDV GWLKTVDQYY  60
   61 VGSNNSIRGA CVQNVLDSVI ASLLDDENRK FIYVEMAFFQ RWWRQQSNAK KVKVKKLVDS 120
  121 GQLEFINGGM CMHDEATPHY IDMIDQTTLG HQFIKTEFGQ VPRVGWQIDP FGHSAVQAYL 180
  181 LGAEFGFDSL FFARIDYQDR AKRLREKTLE VIWQGSKSLG SSSQIFTGVF PRHYDPPEGF 240
  241 TFEINDVSAP IQDDPLLFDY NVQERVNDFV AAALAQVNVT RTNHIMWLMG TDFRYQYAYS 300
  301 WFRQIDKFIH YVNKDGRLNV LYSTPSIYTD AKYAANESWP LKTDDFFPYA DKPNAYWTGY 360
  361 FTSRPAFKKY VRDLSGYYLA ARQLEFLRGR DSSGPTTDML ADALAIAQHH DAVSGTQRQH 420
  421 VAADYALRLS MGYLQAEKLV ASSLSFLSAA KSSTEKKNPG TKFQQCPLLN ISYCPASEAR 480
  481 LLSGKSLVVV VYNSLGWKRE EVVRVPVSSE NVIVKDASGK EVVFQLLPLS EIALRIRNEY 540
  541 VKAYLGRSPR DTAKHVLAFT ASVPPLGFSS YVISDTGRTA RGLSASYVTS GSMNQNVEVG 600
  601 QGNLKLRYSE EGVKITRHLS TKNQVTAEQS YAYYIGSNGT DKDPQASGAY VFRPDGVLPI 660
  661 KSKEEAQLTI VQGPLFDEVH QELNSWISQI TRVYKGKNHA EIEFTIGPIP ADDGISKEII 720
  721 TKLTTTMKTN GTFYTDSNGR DFIKRIRDFR TDWDLQVYQP VAGNYYPLNL GIYMQDKTSE 780
  781 LSVLVDRAVG GSSLENGQIE LMLHRRMQHD DIRGVGEILN ETVCLPEGCK GLTIQGKFYV 840
  841 QIDKPGDGAK WRRTFGQEIY SPLLIAFTEQ EGDSWINSHK TTFSAFEPSY SLPKNVALLT 900
  901 LQELENGEVL LRLAHLFEVG EDSEYSVMAK VELKKLFHNK KIREVKETSL SGNQEKAEME 960
  961 KRRLIWKVEG SAGEEVKRGE AVDAEKLVVE LVPMEIRTLL IKFDDQIEMV GDKEQQHRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ps3A
Description:	Golgi alpha-mannosidase II in complex with kifunensine
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits