YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15230007, gi\|...
Organism:	Arabidopsis thaliana
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15230007, gi|....

Description	E-value	Query Range	Subject Range
RCF1_PODAN - Respiratory supercomplex factor 1, mitochondrial OS=Podospora anserina (strain S / ATCC MYA-4624 / D... gi\|170940071, gi... - gi\|27764338\|emb\|CAD60618.1\| unnamed protein product [Podospora anserina], gi\|170940071\|emb\|CAP65298....	114.0	[0..4]	[96..23]
gi\|85092704 - gi\|85092704\|ref\|XP_959506.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28920941, gi\|... - gi\|32421567\|ref\|XP_331227.1\| hypothetical protein [Neurospora crassa], gi\|28920941\|gb\|EAA30270.1\| hy...	112.0	[0..4]	[96..47]
HIGD2A - HIG1 hypoxia inducible domain family, member 2A gi\|123981980, gi... - gi\|123996809\|gb\|ABM86006.1\| HIG1 domain family, member 2A [synthetic construct], gi\|123981980\|gb\|ABM...	110.0	[0..2]	[78..30]
gi\|114603533 - gi\|114603533\|ref\|XP_527130.2\| PREDICTED: hypothetical protein [Pan troglodytes]	109.0	[0..2]	[78..30]
gi\|61862118, gi\|... - gi\|61862118\|ref\|XP_582867.1\| PREDICTED: similar to CG9921-PA [Bos taurus], gi\|119895156\|ref\|XP_00125...	109.0	[0..2]	[78..30]
gi\|220948008, gi... - gi\|220957272\|gb\|ACL91179.1\| CG9921-PA [synthetic construct], gi\|220948008\|gb\|ACL86547.1\| CG9921-PA [... FBpp0305494, FBp... - type=protein; loc=X:complement(16225595..16225758,16225842..16225986); ID=FBpp0305495; name=CG9921-P...	109.0	[0..1]	[77..26]
RCF1_MAGO7 - Respiratory supercomplex factor 1, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617...	109.0	[0..4]	[96..28]
gi\|109496379, gi... - gi\|62658301\|ref\|XP_214433.2\| PREDICTED: similar to RIKEN cDNA 2010110M21 [Rattus norvegicus], ref\|XP...	109.0	[0..3]	[78..31]
gi\|57085177 - gi\|57085177\|ref\|XP_536423.1\| PREDICTED: similar to CG9921-PA isoform 1 [Canis familiaris]	108.0	[0..2]	[78..30]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL  60
   61 TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.941	a.7.16	Description not found.
View	Download	0.938	a.7.16	Description not found.
View	Download	0.904	a.24.9	alpha-catenin/vinculin
View	Download	0.885	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.885	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.883	a.24.9	alpha-catenin/vinculin
View	Download	0.878	a.24.9	alpha-catenin/vinculin
View	Download	0.877	a.24.9	alpha-catenin/vinculin
View	Download	0.860	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.798	a.7.7	BAG domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits