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View Structure Prediction Details

Protein: gi|20268707, gi|...
Organism: Arabidopsis thaliana
Length: 230 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20268707, gi|....

Description E-value Query
Range
Subject
Range
DNAJ_METFK - Chaperone protein DnaJ OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dnaJ PE...
228.0 [0..8] [229..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSNSEKIN ENLYAVLGLK KECSKTELRS AYKKLALRWH PDRCSSMEFV EEAKKKFQAI  60
   61 QEAYSVLSDS NKRFLYDVGA YNTDDDDDQN GMGDFLNEMA TMMNQSKPSD NNTGD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.39794
Match: 1bq0A
Description: J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [116-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFEQLQDLFN EMFQGDAAAF PSSSSCSTSN FTSSRSFVFD TNSQRSSSFA TSSMGMNNDP  60
   61 FGYDPRAHSF SLGVDHQQEF KKGKNNGGRR NRRKNNVPSA GHETSSSNNY GVPTS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

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